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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSMIELEFHDVTFDPEVAYANFKRVHTTGLSYDHIRIFYIKGREIKTSLAKRSEWEVTLNLGGWKITVYNTNFPGNRNNP
VPDDGLTLHRLSGFLARYLLEKMLKVSEPEKLIIKSKIINPLAEKNGITWNDGEEVYLSFFPGSEMFLGTFRFYPLAIGI
YKVQRKEMEPKYLEKTMRQRYMGLEAATWTVSKLTEVQSALTVVSSLGWKKTNVSAAARDFLAKFGIN

The query sequence (length=228) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4ijs:A 232 231 0.9825 0.9655 0.9697 4.28e-166 4ijs:B, 4ijs:C, 4ijs:D, 3zla:A, 3zla:B, 3zla:C, 3zla:D, 3zla:E, 3zla:F, 3zla:G, 3zla:H
2 4bhh:F 232 230 0.4342 0.4267 0.4304 1.15e-66 4bhh:B, 4bhh:D, 4bhh:Z
3 4j1j:C 234 217 0.3991 0.3889 0.4194 6.86e-61 4j1g:A, 4j1g:D, 4j1g:C, 4j1g:B, 4j1j:A, 4j1j:B, 4j1j:D
4 4jng:A 226 218 0.3904 0.3938 0.4083 2.97e-57 4jng:B, 4jng:C, 4jng:D
5 4oak:A 190 73 0.1053 0.1263 0.3288 0.48 4mur:A, 4mur:B, 4mus:A, 4mus:B, 4mut:A, 4mut:B, 4oak:B
6 4frx:B 400 47 0.0746 0.0425 0.3617 0.85 4frx:A
7 7w54:B 518 40 0.0658 0.0290 0.3750 1.0 7w54:A
8 8yo4:A 442 74 0.0965 0.0498 0.2973 7.9 8ylu:A, 8ylu:B, 8yo4:B, 8yo7:A, 8yo7:B, 8yon:A, 8yon:B
9 6mhm:B 253 29 0.0526 0.0474 0.4138 9.1 6mhm:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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