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BioLiP
>protein
GSMGVPICGACRRPIEGRVVNAMGKQWHVEHFVCAKCEKPFLGHRHYERKGLAYCETHYNQLFGDV

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7lt9:B 131 63 0.9545 0.4809 1.0000 1.09e-43 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
2 7lt9:B 131 57 0.3030 0.1527 0.3509 0.001 7d2s:B, 7d2t:B, 7d2t:D, 7d2u:B, 1nyp:A, 1u5s:B
3 7qb0:A 127 60 0.3636 0.1890 0.4000 3.27e-11
4 7qb0:A 127 59 0.3636 0.1890 0.4068 8.58e-10
5 6u4m:A 65 57 0.3485 0.3538 0.4035 1.28e-10 6u4n:B
6 1x3h:A 80 58 0.3485 0.2875 0.3966 1.64e-10
7 2dar:A 90 61 0.3485 0.2556 0.3770 2.65e-09
8 2d8z:A 70 65 0.3485 0.3286 0.3538 2.41e-08
9 2dj7:A 80 73 0.3939 0.3250 0.3562 7.56e-08
10 3ixe:B 70 57 0.3636 0.3429 0.4211 2.96e-07
11 1v6g:A 81 34 0.2727 0.2222 0.5294 1.94e-06
12 1g47:A 70 67 0.3333 0.3143 0.3284 8.26e-06 2kbx:B
13 1x64:A 89 54 0.3333 0.2472 0.4074 8.30e-06
14 3f6q:B 72 47 0.2727 0.2500 0.3830 1.22e-05 4hi8:B, 4hi9:B
15 2cuq:A 80 59 0.2576 0.2125 0.2881 2.48e-05
16 1b8t:A 192 64 0.3788 0.1302 0.3906 3.49e-05 1ctl:A
17 2cur:A 69 62 0.2727 0.2609 0.2903 5.18e-05
18 6mif:A 79 57 0.3030 0.2532 0.3509 1.10e-04
19 1m3v:A 122 66 0.2879 0.1557 0.2879 4.63e-04
20 2l4z:A 121 60 0.2727 0.1488 0.3000 4.77e-04
21 6cme:A 154 61 0.2576 0.1104 0.2787 7.15e-04 6cme:B, 3mmk:A, 3mmk:B
22 2dfy:X 158 61 0.2727 0.1139 0.2951 7.47e-04 2dfy:C, 1rut:X
23 2dfy:X 158 52 0.2424 0.1013 0.3077 0.32 2dfy:C, 1rut:X
24 2d8x:A 70 61 0.3030 0.2857 0.3279 8.11e-04
25 2dlo:A 81 36 0.2121 0.1728 0.3889 0.001
26 1iml:A 76 61 0.3030 0.2632 0.3279 0.001
27 1cxx:A 59 55 0.2879 0.3220 0.3455 0.005 1ibi:A, 1qli:A
28 1wyh:A 72 48 0.2273 0.2083 0.3125 0.008
29 2cup:A 101 58 0.2727 0.1782 0.3103 0.011
30 1x61:A 72 44 0.2424 0.2222 0.3636 0.014
31 2cu8:A 76 47 0.2424 0.2105 0.3404 0.019
32 4kfz:B 148 64 0.2879 0.1284 0.2969 0.038 4kfz:A, 2xjy:A, 2xjz:A, 2xjz:B, 2xjz:C, 2xjz:D, 2xjz:E, 2ypa:C
33 4kfz:B 148 53 0.2424 0.1081 0.3019 1.3 4kfz:A, 2xjy:A, 2xjz:A, 2xjz:B, 2xjz:C, 2xjz:D, 2xjz:E, 2ypa:C
34 1x62:A 79 57 0.2424 0.2025 0.2807 0.042
35 1x4k:A 72 63 0.2424 0.2222 0.2540 0.057
36 2d8y:A 91 50 0.2273 0.1648 0.3000 0.061
37 2o13:A 58 40 0.2121 0.2414 0.3500 0.068
38 2egq:A 77 53 0.2576 0.2208 0.3208 0.15
39 2cor:A 79 53 0.2576 0.2152 0.3208 0.19
40 2xqn:T 125 55 0.2273 0.1200 0.2727 0.25 2iyb:E, 2iyb:F, 2iyb:G, 2iyb:H
41 2xqn:T 125 55 0.2121 0.1120 0.2545 0.43 2iyb:E, 2iyb:F, 2iyb:G, 2iyb:H
42 2mbv:A 96 52 0.2424 0.1667 0.3077 0.27
43 1ee8:A 266 38 0.2576 0.0639 0.4474 0.33 1ee8:B
44 1wig:A 73 34 0.1818 0.1644 0.3529 0.39
45 2lxd:A 123 53 0.2424 0.1301 0.3019 0.60 2l6y:B, 2l6z:C
46 2lzu:A 72 60 0.2576 0.2361 0.2833 1.1
47 3ebe:C 177 28 0.1667 0.0621 0.3929 1.2 3ebe:A, 3ebe:B, 3h15:A
48 6yxy:BX 133 63 0.3182 0.1579 0.3333 1.4 7aoi:BX, 6hiv:BX, 6hix:BX
49 7aih:Ax 167 62 0.2424 0.0958 0.2581 1.5 7am2:Ax, 7ane:Ax
50 7qep:M3 161 22 0.1667 0.0683 0.5000 3.3
51 3vu2:A 692 24 0.1515 0.0145 0.4167 3.5 7ml5:A, 3vu2:B
52 4jcj:C 150 64 0.2424 0.1067 0.2500 3.8 4jcj:A, 4jcj:B
53 1x4l:A 72 47 0.1818 0.1667 0.2553 4.0
54 7cyx:A 363 22 0.1667 0.0303 0.5000 4.1 7cyx:B
55 5clt:A 646 24 0.1667 0.0170 0.4583 4.2 5clt:B, 5clt:C, 5clw:A, 5clw:C, 5clw:B
56 1x63:A 82 60 0.2273 0.1829 0.2500 4.4
57 6gaw:B2 179 42 0.2273 0.0838 0.3571 5.1 5aj4:B2, 6gb2:B2, 7nqh:B2, 7nql:B2, 7nsh:B2, 7nsi:B2, 7nsj:B2, 8oin:BF, 8oiq:BF, 4v19:2, 6ydp:B2, 6ydw:B2
58 8twf:C 385 31 0.2121 0.0364 0.4516 5.9 8twf:D, 8twf:A, 8twf:B
59 6v8i:AE 387 13 0.1212 0.0207 0.6154 8.3 6v8i:CE, 6v8i:BE
60 6sw9:C 61 33 0.1818 0.1967 0.3636 9.4 6swc:C, 6swd:C, 7zag:C, 7zah:C, 7zai:C, 7zhg:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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