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BioLiP
>protein
GSHSEADNYARELKREQEEIIRVPDTEAAEVAEILARYGIEPHEYGPVVNALRKKPQAWLDFMMKFELGLEK

The query sequence (length=72) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6iu4:A 225 71 0.9583 0.3067 0.9718 3.66e-46 6iu3:A, 6iu5:A, 6iu5:D, 6iu5:B, 6iu5:C, 6iu5:E, 6iu5:H, 6iu5:F, 6iu5:I, 6iu6:A, 6iu6:D, 6iu6:B, 6iu6:C, 6iu6:E, 6iu6:H, 6iu6:F, 6iu6:I, 6iu8:A, 6iu8:B, 6iu8:C, 6iu8:D, 6iu8:E, 6iu8:F, 6iu8:H, 6iu8:I, 6iu9:A, 6iu9:D, 6iu9:B, 6iu9:C, 6iu9:E, 6iu9:H, 6iu9:F, 6iu9:I
2 3keo:B 207 30 0.2083 0.0725 0.5000 0.10 3keo:A, 3keq:A, 3keq:B, 3ket:A
3 6kme:A 284 34 0.1528 0.0387 0.3235 2.1 6kmd:A
4 4v3p:Ls 262 31 0.1528 0.0420 0.3548 2.7 4v7e:Cq
5 7jj9:A 461 22 0.1528 0.0239 0.5000 5.0 7jj8:B, 7jj8:A, 7jj8:C, 7jj8:D, 7jja:A, 7jjb:A
6 2wys:B 516 27 0.1528 0.0213 0.4074 7.2 2w5f:A, 2w5f:B, 2wys:A, 2wze:A, 2wze:B
7 6xwl:C 477 38 0.1250 0.0189 0.2368 7.6 6xwl:F, 6xwl:A, 6xwl:B, 6xwl:D, 6xwl:E, 6xyl:A, 6xyl:B, 6xyl:C, 6xyl:D, 6xyl:E, 6xyl:F, 6y21:D, 6y21:A, 6y21:B, 6z3s:D, 6z3s:A, 6z3s:B, 6zs7:D, 6zs7:A, 6zs7:B, 6zs7:C, 6zs7:E, 6zs7:F
8 3m4e:C 293 25 0.1111 0.0273 0.3200 7.7 3m4e:B, 3m4e:G, 3m4e:F, 3m4e:E, 6u49:A, 6u49:C, 6u49:B, 6u49:G, 6u49:D, 6u49:E, 6u49:F, 6u4p:A, 6u4p:B, 6u4p:C, 6u4p:D, 6u4p:E, 6u4p:F, 6u4p:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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