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BioLiP
>protein
GSHMPKIVEVNYTWATPLSYNFNPNMIVYHHTVDNNMTPQKIDEIHKQRGWSGIGYHFYIRKDGTIYRGRPENAVGSHAP
GVNARAFGIASEGNFNEEYVTPQQMTSLIALSRYLMNKYNITDLKRHKDVRQTECPGNNFPFEEIKAKLNVK

The query sequence (length=152) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 6srt:A 152 152 1.0000 1.0000 1.0000 4.97e-115 6ssc:A
2 7f5i:A 153 128 0.3289 0.3268 0.3906 1.21e-26
3 1lba:A 146 108 0.2829 0.2945 0.3981 1.06e-20
4 1oht:A 173 155 0.3487 0.3064 0.3419 4.49e-17 7nsx:AAA, 7nsz:AAA, 7nt0:AAA, 7nt0:BBB
5 6su5:A 154 119 0.2697 0.2662 0.3445 3.85e-16
6 6fhg:A 156 138 0.3026 0.2949 0.3333 5.66e-14 6fhg:B
7 4z8i:A 224 160 0.3026 0.2054 0.2875 8.68e-14
8 2cb3:C 173 103 0.2368 0.2081 0.3495 7.89e-10 2cb3:A, 2cb3:B, 2cb3:D
9 3cg9:A 171 106 0.2237 0.1988 0.3208 8.50e-10 6a89:B, 6a89:A, 6a89:D, 3cg9:B, 3cxa:A, 3cxa:B, 7dy5:C, 5e0b:C, 4fnn:A, 4fnn:B, 4fnn:D, 4gf9:D, 4gf9:C, 3ng4:C, 3ng4:D, 3nno:D, 3nw3:D, 3o4k:A, 3o4k:C, 3o4k:D, 3ogx:C, 3ogx:A, 4opp:A, 4opp:B, 4opp:D, 4opp:C, 4orv:D, 4oug:C, 4oug:D, 4q8s:A, 4q8s:C, 4q8s:D, 4q9e:D, 3qv4:C, 3rt4:C, 3rt4:D, 3t2v:B, 3t2v:D, 3t39:D, 3tru:D, 3usx:B, 7xfw:C, 7xfx:C, 7xfy:C, 7xfy:D, 7xu8:A, 7xu8:B
10 2f2l:X 166 94 0.1908 0.1747 0.3085 2.27e-08
11 2aph:A 165 113 0.2303 0.2121 0.3097 3.50e-07 2aph:B, 1sk4:A, 1twq:A
12 2eax:C 164 93 0.1974 0.1829 0.3226 3.56e-06
13 2xz4:A 165 130 0.2500 0.2303 0.2923 3.80e-05
14 2f2l:A 167 67 0.1316 0.1198 0.2985 0.017
15 6d50:B 840 55 0.1184 0.0214 0.3273 2.8 6d50:A, 6nzg:A, 6nzg:B, 5uj6:A, 5uj6:B
16 5lt9:B 253 62 0.1118 0.0672 0.2742 3.7 5lt9:A, 5lto:A, 5lto:B
17 7qep:D6 101 23 0.0658 0.0990 0.4348 4.5
18 7pvn:B 990 102 0.1513 0.0232 0.2255 7.4 7sol:C
19 7sol:A 1011 102 0.1513 0.0227 0.2255 7.9 7pvn:A
20 7fbq:A 234 26 0.0724 0.0470 0.4231 8.5 1k0n:A
21 8iyb:A 275 72 0.1316 0.0727 0.2778 9.1 8iyb:B, 8iyc:A, 8iyc:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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