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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSHMATACKRSGEPQSDDIEASRMKRAAAKHLIERYYHQLTEGCGNEACTNEFCASCPTFLRMDNNAAAIKALELYKINA
KLCDPHP

The query sequence (length=87) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8ept:A 90 90 0.9310 0.9000 0.9000 5.26e-55 8enp:A, 2kr1:A, 6u19:B
2 4wai:A 91 31 0.1264 0.1209 0.3548 0.92 4wai:C, 4wai:B, 4wai:D
3 1uf2:A 967 65 0.1839 0.0165 0.2462 1.4
4 6rie:A 1285 54 0.1724 0.0117 0.2778 3.2 7amv:A, 7aof:A, 7aoh:A, 7aoz:A, 7ap8:A, 7ap9:A, 8c8h:A, 8p0j:A, 8p0k:A, 8p0n:A, 6rfl:A, 6ric:A, 6rid:A
5 8id1:A 780 44 0.1494 0.0167 0.2955 3.2
6 5fi3:A 344 31 0.1494 0.0378 0.4194 5.0 5fi3:B, 5fi5:A, 5fi5:B
7 8p5d:SR0 119 16 0.0920 0.0672 0.5000 6.3 8p60:SR0, 8p60:RR0, 7qca:SR0
8 3r3z:A 304 24 0.1379 0.0395 0.5000 6.5 6gxd:A, 6gxt:A, 5k3b:A, 5k3e:A, 6qhp:A, 6qhp:B, 6qhq:A, 6qhs:A, 6qht:A, 6qhu:A, 6qhv:A, 6qhw:A, 6qhw:B, 6qhx:A, 6qhx:B, 6qhy:A, 6qhz:A, 6qi0:A, 6qi0:B, 6qi1:A, 6qi2:A, 6qi3:A, 6qkt:A, 6qku:A, 6qkw:B, 3r3v:A, 3r3w:A, 3r3x:A, 3r3z:B, 3r3z:C, 3r3z:D, 5swn:A, 5t4t:B, 5t4t:A
9 2dc3:A 172 31 0.1149 0.0581 0.3226 8.0 3ag0:A, 4b3w:A, 4b3w:B, 2dc3:B, 1umo:A, 1umo:B, 1urv:A, 1urv:B, 1ury:A, 1ury:B, 1ut0:A, 1ut0:B, 1ux9:A, 1ux9:B, 1v5h:A
10 7xp0:A 200 28 0.0805 0.0350 0.2500 8.2 7xp1:A
11 7stt:A 445 44 0.1379 0.0270 0.2727 9.4 7stu:A, 7stv:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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