Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSGISPSLKNFLLSIASGGLVLTVIIGVVVGVSNFD

The query sequence (length=36) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7oui:X 36 36 1.0000 1.0000 1.0000 2.97e-17 7oui:x
2 5xnl:X 39 33 0.6944 0.6410 0.7576 1.04e-11 5xnl:x
3 7pi0:X 30 29 0.4444 0.5333 0.5517 6.28e-05 7pi0:x, 7pi5:X, 7pi5:x, 7pin:X, 7pin:X1, 7pin:x1, 7piw:X, 7piw:x, 7piw:x1, 7pnk:X, 7pnk:x
4 6kaf:x 35 34 0.4444 0.4571 0.4706 0.004 6kaf:X, 8kde:X, 8zee:X
5 4il6:X 40 33 0.3611 0.3250 0.3939 0.012 3a0b:X, 3a0b:x, 5b5e:X, 5b5e:x, 5b66:X, 5b66:x, 7d1t:X, 7d1t:x, 7d1u:X, 7d1u:x, 6dhe:X, 6dhf:X, 6dhh:X, 6dho:X, 6dhp:X, 5e79:X, 5e7c:X, 5e7c:x, 7eda:X, 8ez5:X, 8ez5:x, 8f4d:X, 8f4d:x, 8f4e:X, 8f4f:X, 8f4f:x, 8f4g:X, 8f4h:X, 8f4i:X, 8f4i:x, 8f4j:X, 8f4j:x, 8f4k:X, 8gn0:x, 8gn1:x, 8gn2:x, 5h2f:X, 5h2f:x, 4il6:x, 8ir5:X, 8ir6:x, 8ir8:x, 8ira:X, 8irc:x, 8ird:x, 8ire:x, 8irf:x, 8iri:X, 8iri:x, 4ixr:X, 6jlj:X, 6jlj:x, 6jlk:X, 6jlk:x, 6jll:x, 6jlm:x, 6jln:X, 6jln:x, 6jlp:X, 6jlp:x, 5kaf:X, 5kai:X, 5kai:x, 3kzi:X, 5mx2:x, 4pbu:X, 4pbu:x, 7rf1:x, 7rf2:X, 7rf3:X, 7rf4:X, 7rf4:x, 7rf5:X, 7rf6:X, 7rf7:X, 7rf8:X, 7rf8:x, 4rvy:X, 4rvy:x, 5tis:x, 4ub6:X, 4ub8:X, 5v2c:X, 5v2c:x, 4v62:AX, 4v62:BX, 6w1o:X, 6w1o:x, 6w1p:X, 6w1r:X, 6w1t:X, 6w1u:X, 6w1v:X, 6w1v:x, 3wu2:X, 3wu2:x, 7yq2:X, 7yq2:x, 7yq7:x, 5zzn:x
6 7e25:A 139 27 0.2778 0.0719 0.3704 1.5 1fdq:A, 1fdq:B, 1fe3:A, 8ivf:B, 8ivf:A, 8ivl:A, 5ura:A, 5ura:B, 5ura:C, 5ura:D
7 6lm1:A 226 26 0.2778 0.0442 0.3846 4.3 6lm1:B, 6lm1:C
8 7qwv:A 117 22 0.3056 0.0940 0.5000 5.0
9 7vd5:X 37 33 0.3333 0.3243 0.3636 5.7 6jlu:X, 6jlu:x, 7vd5:x
10 4trb:B 209 23 0.2778 0.0478 0.4348 5.9 4trc:A, 4trc:B, 4ts5:A, 4ts5:B, 4ts7:A, 4ts7:B
11 8wql:XD 40 21 0.2500 0.2250 0.4286 6.5 8wql:XE, 8wql:X1, 8wql:x1, 8wql:xD, 8wql:xE
12 1ee0:A 376 23 0.3056 0.0293 0.4783 7.8 1ee0:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218