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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GSCKGRCFELQEVGPPDCRCDNLCKSYSSCCHDFDELCLKTARGWECTKDRCGEVRNEENACHCSEDCLSRGDCCTNYQV
VCKGESHWVDDDCEEIKVPECPAGFVRPPLIIFSVDGFRASYMKKGSKVMPNIEKLRSCGTHAPYMRPVYPTKTFPNLYT
LATGLYPESHGIVGNSMYDPVFDASFHLRGREKFNHRWWGGQPLWITATKQGVRAGTFFWSVSIPHERRILTILQWLSLP
DNERPSVYAFYSEQPDFSGHKYGPFGPEMTNPLREIDKTVGQLMDGLKQLRLHRCVNVIFVGDHGMEDVTCDRTEFLSNY
LTNVDDITLVPGTLGRIRAKSINNSKYDPKTIIAALTCKKPDQHFKPYMKQHLPKRLHYANNRRIEDIHLLVDRRWHVAR
KPLDKCFFQGDHGFDNKVNSMQTVFVGYGPTFKYRTKVPPFENIELYNVMCDLLGLKPAPNNGTHGSLNHLLRTNTFRPT
MPDEVSRPNYPGIMYLQSEFDLGCTCDDKLEELNKRLHTKGSTKERHLLYGRPAVLYRTSYDILYHTDFESGYSEIFLMP
LWTSYTISKQAEVSSIPEHLTNCVRPDVRVSPGFSQNCLAYKNDKQMSYGFLFPPYLSSSPEAKYDAFLVTNMVPMYPAF
KRVWAYFQRVLVKKYASERNGVNVISGPIFDYNYDGLRDTEDEIKQYVEGSSIPVPTHYYSIITSCLDFTQPADKCDGPL
SVSSFILPHRPDNDESCASSEDESKWVEELMKMHTARVRDIEHLTGLDFYRKTSRSYSEILTLKTYLHTYE

The query sequence (length=791) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5s9m:A 809 802 0.9987 0.9765 0.9850 0.0 8c3o:A, 5dlt:A, 9ent:A, 9eu5:A, 5hrt:A, 5ijq:A, 5ijs:A, 5lia:A, 3nkm:A, 3nkp:A, 5s9l:A, 5s9n:A, 6w35:A, 3wav:A, 3wax:A, 2xr9:A, 7z0n:AAA, 7z3k:AAA, 7z3l:AAA
2 3way:A 787 791 0.9646 0.9695 0.9646 0.0 8c3o:B, 8c3p:A, 8c3p:B, 8c4w:A, 8c7r:A, 5dlv:A, 5dlv:B, 5dlw:A, 5inh:A, 5l0b:A, 5l0b:B, 5l0e:A, 5l0e:B, 5l0k:A, 5l0k:B, 6leh:A, 5lqq:A, 5m0d:A, 5m0e:A, 5m0m:A, 5m0s:A, 7mfh:A, 5mhp:A, 3nkn:A, 3nko:A, 3nkq:A, 3nkr:A, 5ohi:A, 5olb:A, 7p0k:AAA, 7p4j:A, 7p4o:A, 3waw:A, 6y5m:A, 4zg7:A
3 2xrg:A 758 790 0.9558 0.9974 0.9570 0.0
4 4zg9:B 764 797 0.9064 0.9385 0.8996 0.0 5kxa:A, 5m7m:A, 4zg6:A, 4zg6:B, 4zg9:A, 4zga:A
5 6c01:A 819 819 0.4716 0.4554 0.4554 0.0 6c01:B, 6c02:A, 6c02:B
6 5gz4:A 804 812 0.4930 0.4851 0.4803 0.0 7cba:A, 7cba:B, 5gz5:A
7 6wev:AbA 817 822 0.4791 0.4639 0.4611 0.0 8ghr:A, 8ghr:B, 6wet:AaA, 6wet:BaB, 6weu:AbA, 6weu:BbB, 6wev:BbB, 6wew:AbA, 6wew:BaB, 6wfj:AcA, 6wfj:BcB
8 6g4g:D 781 818 0.4678 0.4738 0.4523 0.0 6g4g:A
9 4b56:A 816 819 0.4576 0.4436 0.4420 0.0 6aek:A, 6ael:A, 4b56:B
10 6g4g:B 759 818 0.4576 0.4769 0.4425 0.0
11 6g4g:C 742 808 0.4551 0.4852 0.4455 0.0
12 6f2t:B 722 731 0.4298 0.4709 0.4651 0.0 6f2t:A, 6f2v:A, 6f2v:B, 6f2y:A, 6f2y:B, 6f30:A, 6f30:B, 6f33:A, 6f33:B
13 4gtw:A 706 725 0.4020 0.4504 0.4386 0.0 4gtw:B, 4gtx:A, 4gtx:B, 4gty:A, 4gty:B, 4gtz:A, 4gtz:B, 6xkd:B
14 6xkd:A 679 721 0.3982 0.4639 0.4369 0.0
15 4lqy:A 379 393 0.1707 0.3562 0.3435 4.75e-57 4lr2:A
16 5vem:A 383 384 0.1530 0.3159 0.3151 1.44e-55 5vem:B, 5vem:C
17 5ven:A 382 383 0.1492 0.3089 0.3081 1.44e-55 5ven:B, 5veo:A
18 5tcd:A 388 399 0.1618 0.3299 0.3208 6.73e-52 5udy:A
19 7mw8:C 385 388 0.1403 0.2883 0.2861 5.57e-49 2gsn:A, 2gsn:B, 2gso:A, 2gso:B, 2gsu:A, 2gsu:B, 7mw8:A, 7mw8:D, 7mw8:B, 7mw8:E, 7mw8:F, 7n1s:A, 7n1s:B, 2rh6:A, 2rh6:B
20 5egh:B 393 402 0.1391 0.2799 0.2736 7.82e-47 5ege:A, 5ege:B, 5ege:C, 5ege:D, 5egh:A
21 3szy:A 413 247 0.0784 0.1501 0.2510 2.69e-06 3szz:A, 3t00:A, 3t01:A, 3t02:A
22 1ei6:A 404 242 0.0683 0.1337 0.2231 0.009 1ei6:B, 1ei6:C, 1ei6:D
23 1n2l:A 483 69 0.0303 0.0497 0.3478 0.032 1auk:A, 1e1z:P, 1e2s:P, 1e33:P, 1e3c:P, 1n2k:A
24 6s21:A 486 40 0.0215 0.0350 0.4250 0.055 6s21:B, 6s21:C
25 6hhm:A 459 30 0.0164 0.0283 0.4333 0.40
26 5tj3:A 520 135 0.0442 0.0673 0.2593 1.4 5too:A
27 8eg3:A 554 65 0.0265 0.0379 0.3231 2.7 1p49:A
28 8ooc:J 448 48 0.0215 0.0379 0.3542 2.8 6fhs:J, 8oof:J, 8oor:J, 8oot:J
29 7shg:A 591 187 0.0594 0.0795 0.2513 2.8 7shg:B
30 7oz9:BBB 483 47 0.0164 0.0269 0.2766 2.8 7oz9:AAA
31 6b11:A 385 90 0.0341 0.0701 0.3000 3.2 6b11:B
32 8e1u:A 1126 101 0.0367 0.0258 0.2871 4.1 8e1u:B, 8e1u:C, 8e1u:D, 8e1u:E, 8e1u:F, 8e1u:G, 8e1u:H
33 5nd5:A 669 65 0.0278 0.0329 0.3385 4.2 5nd5:B
34 4fdi:A 494 61 0.0190 0.0304 0.2459 4.3 4fdi:B, 4fdj:A, 4fdj:B
35 8di0:B 426 30 0.0139 0.0258 0.3667 4.6
36 1y1p:A 342 64 0.0253 0.0585 0.3125 5.7 1y1p:B
37 5fql:A 507 81 0.0291 0.0454 0.2840 7.1 6ioz:A
38 6vrb:A 1031 74 0.0265 0.0204 0.2838 7.1
39 6vrc:A 1007 74 0.0265 0.0209 0.2838 7.4

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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