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TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GSATQSPGDSRRLSIQRAIQSLVHAAQCRNANCSLPSCQKMKRVVQHTKGCKRKTNGGCPICKQLIALAAYHAKHCQENK
CPVPFCLNIKQK

The query sequence (length=92) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7xez:A 163 92 0.9891 0.5583 0.9891 1.54e-63 8e1d:A, 1f81:A, 2mzd:A, 7xfg:A
2 6fgs:A 130 90 0.9783 0.6923 1.0000 6.13e-63
3 6fgn:A 124 90 0.9783 0.7258 1.0000 3.49e-62
4 3io2:A 109 87 0.9457 0.7982 1.0000 2.27e-60 3p57:P
5 3t92:A 113 84 0.9130 0.7434 1.0000 2.61e-58
6 5hpd:A 158 87 0.8587 0.5000 0.9080 2.04e-53 2ka6:A, 2kje:A
7 5hp0:A 122 87 0.8587 0.6475 0.9080 2.06e-53
8 5hou:A 171 61 0.2391 0.1287 0.3607 0.025 2ka4:A, 1l3e:B, 1l8c:A, 7lvs:B, 2lww:A, 1p4q:B, 7qgs:A, 1r8u:B, 1u2n:A
9 1ea0:A 1452 31 0.1196 0.0076 0.3548 1.7 1ea0:B
10 6s6t:A 1472 31 0.1196 0.0075 0.3548 1.7 6s6s:A, 6s6s:B, 6s6s:C, 6s6s:D, 6s6t:B, 6s6t:C, 6s6t:D, 6s6u:A, 6s6u:B, 6s6u:C, 6s6u:D, 6s6u:E, 6s6u:F, 6s6x:A, 6s6x:B, 6s6x:C, 6s6x:D, 6s6x:E, 6s6x:F, 2vdc:A, 2vdc:B, 2vdc:C, 2vdc:D, 2vdc:E, 2vdc:F
11 3ntl:A 388 52 0.2174 0.0515 0.3846 2.9 3ntl:B
12 7t3u:A 2020 47 0.1413 0.0064 0.2766 6.3 7t3u:D
13 2fq1:A 279 34 0.1087 0.0358 0.2941 6.6
14 8s91:A 602 28 0.0978 0.0150 0.3214 6.8 7dp3:A, 8s91:B, 8s91:C, 8s94:A, 8s94:C, 8s94:B
15 7wi7:A 565 28 0.0978 0.0159 0.3214 7.8
16 8cvc:A 327 63 0.2065 0.0581 0.3016 7.9 8cv8:A, 8cv9:A, 8cva:A, 8cvb:A, 8cvd:A, 8cve:A, 8cvf:A, 8cvg:A, 8cvh:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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