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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GRKTIFVAAGSPSHDLQAANFMRDLKKKSNNNYDFVGIGGPLMQAEGLNQSYADINKFIDKPFFPLKNFIRFHVARCYHP
YMAPLHFFNKQVLNQVDKSSLLKDQVELSIPSAIITFGNEFFMKKLYVRLCDQYELHNKIRPPTFFYDRSHINQRFEFQD
YLDHFFYTIPMKQINFQSFTYPSTCVGHEGVGRAIQYLFQNSKQYANVKSLVTANGLKIASNPKQHREIIEKLVEEQRGI
QRARLGINESKNVFLLAPGNTKAEINFAVNLLSRSLEEFFKKPQLTNVSRDHFTIIITADNAQNAEFVNQAVSNTKYLKT
LQTIVTTGEKEKFGAMCAADVGIPLNGELVSECAALQLPSVIISNMNLFYAYITQLYNNFYSDINFAIQGEAYHELVSTA
ANPYKLSDEIFDLYSDPKLRYHFAERYQNVVHEMIPQANSQDNIVTTDVATLHGVEVQERAFTYETIAAKVLKAARAYES
LDKNIPNHQIDQHRKEKLIKAAF

The query sequence (length=503) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8b6f:A0 503 503 1.0000 1.0000 1.0000 0.0 8bqs:A0
2 5w8x:A 366 49 0.0437 0.0601 0.4490 5.26e-04
3 5w8x:A 366 167 0.0755 0.1038 0.2275 0.032
4 2pfy:A 301 64 0.0437 0.0731 0.3438 1.8 2pfy:B, 2pfy:C, 2pfy:D
5 4a35:A 441 111 0.0497 0.0567 0.2252 2.4
6 7bv5:C 284 52 0.0298 0.0528 0.2885 3.3
7 8v46:A 412 53 0.0318 0.0388 0.3019 3.5 8ux9:B, 8ux9:C, 8v46:B, 8v47:A, 8v47:B, 8v47:C, 8v48:A, 8v48:B, 8v48:C, 8v48:F, 8v49:A, 8v49:B
8 3j5s:D 554 54 0.0358 0.0325 0.3333 3.8
9 8btt:B 484 55 0.0358 0.0372 0.3273 5.9
10 7v6w:B 85 53 0.0318 0.1882 0.3019 6.9 7v6w:C, 7v6w:A, 7v6w:I, 7v6w:D, 7v6w:L, 7v6w:J, 7v6w:K
11 3aii:A 455 76 0.0338 0.0374 0.2237 8.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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