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BioLiP
>protein
GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKVLAK

The query sequence (length=62) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5eea:G 63 61 0.9839 0.9683 1.0000 3.72e-38 8byx:B, 8byx:J, 8byx:A, 8byx:K, 8byx:G, 8byx:L, 5edn:A, 5edn:B, 5edn:G, 5edn:J, 5eea:B, 5eea:A, 5eea:J, 5ef6:A, 5ef6:J, 5ef6:B, 5ef6:G, 5eg0:B, 5ego:B, 5no6:A, 5no6:B, 7psx:A, 7psx:B, 7psx:G, 7psx:J
2 2ld5:A 67 62 0.8226 0.7612 0.8226 3.70e-33
3 1puf:A 77 58 0.4839 0.3896 0.5172 1.44e-17 2lp0:A
4 5zjr:A 64 57 0.5000 0.4844 0.5439 1.42e-15 5zjq:A, 5zjs:A, 5zjt:A, 5zjt:E
5 8eml:A 58 54 0.4194 0.4483 0.4815 5.24e-14 8eml:B
6 2h1k:B 60 58 0.4194 0.4333 0.4483 6.91e-14 2h1k:A
7 2r5z:A 75 56 0.4516 0.3733 0.5000 1.00e-13 9ant:A, 9ant:B, 5jlw:A, 5jlw:D, 5jlx:A, 5jlx:D, 2r5y:A, 4xic:A, 4xic:D, 4xid:A, 4xid:D
8 4uus:A 67 54 0.4355 0.4030 0.5000 4.77e-13 4uus:E
9 1ahd:P 68 54 0.4516 0.4118 0.5185 4.78e-13
10 6es3:K 72 57 0.4194 0.3611 0.4561 9.29e-13 6es2:K, 6es2:L, 6es3:M, 5lty:K, 5lty:M, 5lux:K, 5lux:L, 7q3o:K, 7q3o:C, 7q3o:E, 7q3o:G, 7q4n:K, 7q4n:C
11 4cyc:A 66 54 0.4194 0.3939 0.4815 1.62e-12 1b8i:A
12 1b72:A 68 54 0.4032 0.3676 0.4630 1.84e-12
13 2me6:A 71 60 0.4194 0.3662 0.4333 4.79e-12
14 1ig7:A 58 58 0.3871 0.4138 0.4138 8.95e-12
15 3rkq:A 58 56 0.3387 0.3621 0.3750 6.93e-10 3rkq:B
16 8pna:A 67 60 0.3710 0.3433 0.3833 8.32e-10 8pm5:A, 8pm5:D, 8pm5:G, 8pm5:M, 8pm5:J, 8pm7:A, 8pm7:C, 8pm7:E, 8pm7:G, 8pmc:A, 8pmc:C, 8pmc:E, 8pmc:G, 8pmf:A, 8pmn:A, 8pmv:A, 8pmv:D, 8pmv:G, 8pmv:J, 8pn4:A, 8pn4:D, 8pn4:G, 8pn4:M, 8pn4:J, 8pnc:A, 8pnc:K, 8pnc:E, 8pnc:H
17 4rdu:D 62 59 0.3548 0.3548 0.3729 2.29e-09 4rdu:A, 4xrs:I, 4xrs:G
18 1jgg:A 57 54 0.3065 0.3333 0.3519 6.61e-09 1jgg:B
19 1nk2:P 77 58 0.3226 0.2597 0.3448 1.76e-08 1nk3:P
20 6m3d:C 108 54 0.3548 0.2037 0.4074 3.36e-08 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
21 6m3d:C 108 48 0.3065 0.1759 0.3958 1.64e-07 1du0:A, 1du0:B, 1hdd:C, 1hdd:D, 2hdd:A, 2hdd:B, 3hdd:A, 3hdd:B, 2hos:A, 2hos:B, 2hot:A, 2hot:B
22 2lkx:A 68 57 0.3226 0.2941 0.3509 8.93e-08
23 5flv:M 229 51 0.2903 0.0786 0.3529 1.90e-07 5flv:A, 5flv:E, 5flv:I, 4s0h:A, 4s0h:B, 4s0h:E, 4s0h:F, 6wc2:N, 6wc2:M, 6wc2:O, 6wc5:I, 6wc5:N, 2x6u:A, 2x6v:A, 2x6v:B
24 1fjl:A 65 57 0.3387 0.3231 0.3684 2.66e-07 1fjl:B, 1fjl:C
25 4qtr:C 57 54 0.3387 0.3684 0.3889 5.37e-07 4qtr:A, 4qtr:B, 4qtr:D
26 1zq3:P 68 56 0.2903 0.2647 0.3214 5.71e-07
27 3a01:F 61 57 0.3065 0.3115 0.3333 4.86e-06 3a01:B, 3lnq:A
28 8osb:E 62 56 0.2903 0.2903 0.3214 9.87e-06
29 5hod:A 61 59 0.3065 0.3115 0.3220 1.99e-05 5hod:D
30 4egc:A 539 54 0.3226 0.0371 0.3704 2.47e-05
31 3a01:A 78 60 0.2742 0.2179 0.2833 2.95e-05 3a01:E
32 6e8c:A 135 57 0.3226 0.1481 0.3509 6.49e-05 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
33 6e8c:A 135 49 0.1935 0.0889 0.2449 0.30 6a8r:A, 6a8r:B, 6dfy:C, 6dfy:D, 7dw5:A, 7dw5:B, 6u81:A, 6u82:A, 6u82:D, 5z2t:C, 5z2t:D, 5z6z:A, 5zfw:A, 5zfy:A, 5zfz:A
34 8ejo:A 56 56 0.2581 0.2857 0.2857 1.33e-04 8ejo:B, 8ejp:A, 8ejp:B
35 4rbo:A 55 51 0.2581 0.2909 0.3137 1.64e-04 4rbo:D
36 3cmy:A 60 57 0.2742 0.2833 0.2982 2.33e-04
37 9b8u:B 66 50 0.2258 0.2121 0.2800 6.47e-04 9b8u:A, 9b8u:C, 9b8u:D
38 8ik5:C 67 29 0.2258 0.2090 0.4828 0.004 8ike:C, 8ilw:C
39 1lfu:P 82 66 0.2742 0.2073 0.2576 0.068 1b72:B, 1b8i:B, 4cyc:B, 1puf:B, 2r5y:B, 2r5z:B, 4uus:B, 4uus:F, 5zjq:B, 5zjr:B, 5zjs:B, 5zjt:B
40 1akh:B 78 55 0.3065 0.2436 0.3455 0.095 1apl:C, 1apl:D, 1k61:A, 1k61:B, 1k61:C, 1k61:D, 1le8:B, 1yrn:B
41 1gt0:C 137 57 0.2903 0.1314 0.3158 0.15 1cqt:A, 1cqt:B, 1e3o:C, 1hf0:A, 1hf0:B, 1o4x:A, 1oct:C
42 1mnm:C 77 53 0.3065 0.2468 0.3585 0.26 1mnm:D
43 5wc9:A 136 59 0.2581 0.1176 0.2712 0.35 1au7:A, 1au7:B, 5wc9:B, 5wc9:E, 5wc9:F
44 1zu1:A 127 53 0.2581 0.1260 0.3019 0.44
45 6fqp:A 67 41 0.2097 0.1940 0.3171 0.47 6fqp:B, 6fqq:A, 6fqq:B, 6fqq:D, 6fqq:E
46 4p5x:A 267 49 0.2581 0.0599 0.3265 3.6
47 8ftt:A 128 49 0.2097 0.1016 0.2653 4.0 8ftt:B
48 3ajy:A 133 24 0.1452 0.0677 0.3750 4.7 3ajy:C
49 4llf:D 321 22 0.1613 0.0312 0.4545 4.7 4llf:A, 4llf:B, 4llf:E, 4llf:G, 4llf:F, 4llf:H, 4llf:J, 4llf:I, 4llf:K, 4llf:M, 4llf:L, 4llf:N, 4llf:P, 4llf:O
50 7vfs:A 1266 43 0.1935 0.0095 0.2791 5.1 7vfu:A, 7vfv:A, 7vfw:A
51 5ms0:C 1291 51 0.2419 0.0116 0.2941 6.1
52 5u2i:B 151 22 0.1290 0.0530 0.3636 7.4 5u2i:D
53 5w94:A 617 54 0.3065 0.0308 0.3519 9.3 5w94:C
54 5o1j:A 580 46 0.2419 0.0259 0.3261 9.7 5mpq:A
55 5xyi:S 135 32 0.1613 0.0741 0.3125 9.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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