Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GQLALFSVSDKTGLVEFARNLTALGLNLVASGGTAKALRDAGLAVRDVSELTGFPEMLGGRVKTLHPAVHAGILARNIPE
DNADMARLDFNLIRVVACNLYPFVKTVASPGVTVEEAVEQIDIGGVTLLRAAAKNHARVTVVCEPEDYVVVSTEMQSSES
KDTSLETRRQLALKAFTHTAQYDEAISDYFRKQYSKGVSQMPLRYGMNPHQTPAQLYTLQPKLPITVLNGAPGFINLCDA
LNAWQLVKELKEALGIPAAASFKHVSPAGAAVGIPLSEDEAKVCMVYDLYKTLTPISAAYARARGADRMSSFGDFVALSD
VCDVPTAKIISREVSDGIIAPGYEEEALTILSKKKNGNYCVLQMDQSYKPDENEVRTLFGLHLSQKRNNGVVDKSLFSNV
VTKNKDLPESALRDLIVATIAVKYTQSNSVCYAKNGQVIGIGAGQQSRIHCTRLAGDKANYWWLRHHPQVLSMKFKTGVK
RAEISNAIDQYVTGTIGEDEDLIKWKALFEEVPELLTEAEKKEWVEKLTEVSISSDAFFPFRDNVDRAKRSGVAYIAAPS
GSAADKVVIEACDELGIILAHTNLRLFHH

The query sequence (length=589) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1p4r:A 589 589 1.0000 1.0000 1.0000 0.0 1p4r:B, 1pkx:A, 1pkx:C, 1pl0:A, 1pl0:B, 1pl0:C, 1pl0:D, 5uy8:A, 5uy8:B, 5uy8:C, 5uy8:D, 5uz0:A, 5uz0:B, 5uz0:C, 5uz0:D
2 2b1g:A 590 588 0.8370 0.8356 0.8384 0.0 2b1g:D, 2b1i:A, 2b1i:B, 1g8m:A, 2iu0:B, 2iu3:B, 1m9n:A, 1m9n:B, 1oz0:A, 1oz0:B, 1thz:A, 1thz:B
3 7mgq:A 602 602 0.6333 0.6196 0.6196 0.0 7mgq:B, 7mgq:C, 7mgq:D
4 3zzm:A 520 481 0.2767 0.3135 0.3389 9.54e-65 4a1o:A, 4a1o:B
5 3zzm:A 520 64 0.0407 0.0462 0.3750 2.40e-05 4a1o:A, 4a1o:B
6 7v1l:B 221 132 0.0594 0.1584 0.2652 0.31 7v6p:A
7 5oas:A 728 41 0.0272 0.0220 0.3902 1.3 5vfb:A, 5vfb:B
8 4hz7:A 441 55 0.0323 0.0431 0.3455 1.4 4hz8:A
9 9cc9:A 850 144 0.0577 0.0400 0.2361 3.6 9cc8:A, 9cc8:B, 9cc8:C, 9cc8:D, 9cc8:E, 9cc8:F, 9cc9:B, 9cc9:C, 9cc9:D, 9cc9:E, 9cc9:F, 9cc9:G, 9cc9:H, 9cc9:I, 9cc9:J, 9cc9:K, 9cc9:L
10 6nf1:A 550 33 0.0272 0.0291 0.4848 4.3 3bji:A, 3bji:B, 3ky9:A, 3ky9:B, 6new:A, 6nfa:A, 2vrw:B
11 5n6u:A 811 56 0.0306 0.0222 0.3214 4.3 5n6u:B, 5n6u:C, 5n6u:D
12 2vd8:A 387 49 0.0306 0.0465 0.3673 5.0 2vd8:B, 2vd9:A, 2vd9:B
13 6ynv:e 417 38 0.0238 0.0336 0.3684 5.2 6ynx:e, 6ynx:E, 6yny:e, 6yny:E, 6ynz:e, 6ynz:E, 6ynz:e3, 6ynz:E3
14 3msu:B 426 37 0.0238 0.0329 0.3784 5.9 3msu:A
15 1yol:A 256 60 0.0340 0.0781 0.3333 8.5 7ah3:B, 6ate:A, 5d10:A, 5d10:B, 5d11:A, 5d11:B, 5d12:B, 7d57:B, 7d5o:B, 3el7:A, 3en5:A, 3en6:B, 3en7:A, 4fic:A, 4fic:B, 8haq:A, 8haq:B, 6hve:B, 6hvf:A, 6hvf:B, 2hwo:A, 2hwo:B, 2hwp:A, 2hwp:B, 8jf3:A, 8jf3:B, 4lgg:A, 4lgg:B, 4lgh:A, 4lgh:B, 3lok:A, 3lok:B, 2qlq:A, 2qlq:B, 3qlf:A, 2qq7:A, 2qq7:B, 3uqf:B, 6wiw:A, 4ybj:B, 1yol:B

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218