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BioLiP
>protein
GQIQLWQFLLELLSDSSNSSCITWEGTNGEFKMTDPDEVARRWGERKSKPNMNYDKLSRALRYYYDKNIMTKVHGKRYAY
KFDFHGIAQALQPH

The query sequence (length=94) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6vgd:A 98 94 0.9787 0.9388 0.9787 1.18e-68 5e8g:A, 5e8g:B, 5e8g:C, 5e8g:D, 5e8i:A, 5e8i:D, 5e8i:G, 5e8i:J, 4iri:A, 5jvt:A, 5jvt:D, 5jvt:G, 6vg2:A, 6vg2:D, 6vg8:A, 6vge:A, 6vgg:A, 5ybd:A, 5ybd:X
2 3zp5:A 92 90 0.8191 0.8370 0.8556 9.13e-58
3 4bqa:A 132 82 0.6277 0.4470 0.7195 2.61e-39
4 6da1:B 138 82 0.6170 0.4203 0.7073 6.78e-39 4bqa:D, 4bqa:G, 6da1:A, 6dat:B, 6dat:C, 6dat:D, 6dat:A, 1k78:B, 1k78:F, 1k79:A, 1k79:D, 1k7a:A, 1k7a:D, 4l0y:B, 4l0z:B, 4l18:B, 4l18:F, 4lg0:B, 1mdm:B, 3mfk:A, 3mfk:B, 2nny:A, 2nny:B, 3ri4:A, 3ri4:D, 2stt:A, 2stw:A, 3wts:C, 3wts:H, 3wtt:C, 3wtt:H, 3wtu:C, 3wtu:H, 3wtv:C, 3wtv:H, 3wtw:C, 3wtw:H, 3wtx:C, 3wtx:H, 3wty:C, 3wty:H, 3wu1:B, 5zmc:B
5 1awc:A 110 80 0.5426 0.4636 0.6375 1.73e-36
6 7jsa:J 88 84 0.5638 0.6023 0.6310 2.69e-35 7jsl:J, 7jsl:E, 7jsl:H, 7jsl:L
7 4uuv:A 96 82 0.5319 0.5208 0.6098 2.38e-34 4bnc:A, 4uno:A, 4uuv:D, 4uuv:G, 4uuv:J, 4uuv:M, 4uuv:P, 4uuv:S, 4uuv:V
8 1dux:C 86 81 0.5319 0.5814 0.6173 1.76e-32 1dux:F
9 1hbx:G 112 65 0.4255 0.3571 0.6154 3.91e-25 1bc7:C, 1bc8:C, 1hbx:H, 1k6o:A
10 8bzm:H 88 82 0.4149 0.4432 0.4756 1.45e-21 8bzm:B
11 8e67:F 97 79 0.3830 0.3711 0.4557 9.30e-20 8e66:A, 8e66:F, 8e67:A, 8e67:I, 8e67:L, 4mhg:A
12 3jtg:A 95 81 0.3617 0.3579 0.4198 1.55e-17
13 1yo5:C 88 83 0.4362 0.4659 0.4940 2.31e-17
14 8eo4:F 95 85 0.3085 0.3053 0.3412 2.76e-07 8e3k:F, 8e3r:F, 8e4h:F, 8e5y:F, 8ebh:F, 8ee9:F, 8ej6:F, 8ej8:F, 8ek3:F, 8ek8:F, 8ek8:E, 8ekj:F, 8eku:F, 8ekv:F, 8ekz:F, 8em9:F, 8emd:F, 8eng:F, 8eo1:F, 8eqg:F, 8eqk:F, 8eql:F, 8evh:O, 8evi:O, 8evj:O, 1pue:E, 1pue:F, 8smh:F, 8smj:F, 8sp1:F, 8t9u:F, 8vdh:F, 8vdi:F
15 7b2e:A 548 41 0.1596 0.0274 0.3659 1.1 7ayg:A, 7ayg:B, 7ayg:C, 7ayg:D, 7ayg:E, 7ayg:F, 7ayg:G, 7ayg:H, 7b2e:B, 7b2e:C, 7b2e:D, 7b2e:E, 7b2e:F, 7b2e:G, 7b2e:H
16 7uzf:C 602 32 0.1383 0.0216 0.4062 2.1 9b8p:A, 9brd:A, 7khr:C, 7u4t:B, 7u8p:C, 7u8q:B, 7u8r:A, 7unf:M, 7uzg:C, 7uzh:B, 7uzi:B, 7uzj:C, 7uzk:C, 6vq6:C, 6vq7:B, 6vq8:A, 6vq9:C, 6vqa:B, 6vqb:A, 6wlz:C, 6wm2:C, 6wm3:B, 6wm4:A, 6xbw:C, 6xby:A
17 3vnq:A 497 33 0.0851 0.0161 0.2424 4.1 3vnr:A, 3vns:A
18 8cli:B 689 26 0.1277 0.0174 0.4615 4.8 8clj:B, 8clj:G, 8cll:B, 8cll:G
19 8em7:A 4378 29 0.1064 0.0023 0.3448 5.0 8em7:B, 8jut:A, 8jut:B, 8juu:B, 8juu:A, 8jx8:B, 8jx8:A, 8jx9:B, 8jxa:A, 8jxb:A, 8jxd:A, 8jxe:A, 8jxe:B, 8jxf:B, 8jxg:A, 8jxh:A, 8jxi:B
20 9b1l:A 529 64 0.1596 0.0284 0.2344 5.4 9b1g:A, 9b1h:A, 9b1i:A, 9b1j:A, 9b1k:A, 9b1m:A, 9b1n:A, 9b1o:A
21 8em4:A 3818 29 0.1064 0.0026 0.3448 5.6 8em4:B
22 3gjb:B 271 44 0.1489 0.0517 0.3182 9.7 3gjb:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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