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BioLiP
>protein
GPLGSPEPVGWQCPGCTFINKPTRPGCEMCCRARPETYQIPASYQPDEEERARLAGEEEALRQYQQ

The query sequence (length=66) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8im5:A 66 66 1.0000 1.0000 1.0000 9.83e-44 3b0a:E
2 7yui:B 232 55 0.7879 0.2241 0.9455 1.15e-32 3b08:K, 3b08:B, 3b08:E, 3b08:H, 3b0a:B
3 2crc:A 52 40 0.5606 0.7115 0.9250 1.44e-23
4 1nj3:A 31 20 0.1667 0.3548 0.5500 0.028 1q5w:A
5 3a9j:C 32 20 0.1515 0.3125 0.5000 0.060 9avt:C, 9avw:C, 7e62:C, 7e62:J, 2wwz:C, 2wx0:C, 2wx0:G, 2wx1:C
6 7mo1:B 34 24 0.1515 0.2941 0.4167 0.67
7 2k1p:A 33 20 0.1364 0.2727 0.4500 0.71
8 7odf:A 703 20 0.1364 0.0128 0.4500 1.4
9 3kyd:B 477 20 0.1364 0.0189 0.4500 1.4
10 3kyc:B 548 20 0.1364 0.0164 0.4500 1.8 6cwz:D, 6xog:B, 6xoh:B, 1y8q:B, 1y8q:D, 1y8r:B, 1y8r:E
11 6cwy:D 487 20 0.1364 0.0185 0.4500 2.2
12 7dve:A 498 19 0.1515 0.0201 0.5263 4.1
13 2p0j:A 203 34 0.1667 0.0542 0.3235 4.3 2p0j:B, 1vrr:A, 1vrr:B
14 2cr8:A 53 29 0.1515 0.1887 0.3448 4.4
15 7qbu:A 418 38 0.2121 0.0335 0.3684 5.2 7qbs:A, 7qbt:A, 7qbt:B, 7qbt:C, 7qbt:D, 7qbu:B, 7qbv:A, 7qbv:B, 7qbv:C, 7qbv:D
16 3vmw:A 324 42 0.1818 0.0370 0.2857 5.7
17 7ooc:A 249 21 0.1364 0.0361 0.4286 8.8 7p6z:A, 7pah:A, 7pai:A, 7paj:A, 7pak:A, 7pal:A, 7pam:A, 7pan:A, 7pao:A, 7paq:A, 7par:A, 7pas:A, 7ph9:A, 7pha:A, 7phb:A, 7phc:A, 7pi8:A, 7pi9:A, 7pia:A, 7pib:A, 7pic:A, 7pio:A, 7pip:A, 7piq:A, 7pir:A, 7pis:A, 7pit:A
18 4fk9:A 314 20 0.1212 0.0255 0.4000 9.8
19 4ipi:A 351 22 0.1061 0.0199 0.3182 9.9 4ipj:A, 6ppw:A, 6ppy:A, 6ppz:A, 2wqp:A, 1xuu:A, 1xuz:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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