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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GPLGSPEFDFTPAELRRFDGVQDPRILMAINGKVFDVTKGRKFYGPEGPYGVFAGRDASRGLATFCLDKEALKDEYDDLS
DLTAAQQETLSDWESQFTFKYHHVGKLLKE

The query sequence (length=110) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4x8y:A 112 106 0.9636 0.9464 1.0000 8.76e-76 4x8y:B
2 6nzx:A 76 55 0.1818 0.2632 0.3636 0.019
3 6vz6:A 77 31 0.1091 0.1558 0.3871 0.29
4 7mpt:A 206 49 0.1364 0.0728 0.3061 0.37 7mpt:B, 7mpu:B
5 1cxy:A 81 38 0.1273 0.1728 0.3684 0.56
6 4yd9:A 1656 71 0.1818 0.0121 0.2817 1.8 4yd9:D, 4yd9:G, 4yd9:J, 4yd9:M, 4yd9:P, 4yd9:S, 4yd9:V, 4yd9:Y, 4yd9:b
7 3dqy:A 106 29 0.0818 0.0849 0.3103 2.6 4emj:B
8 8oz6:B 473 92 0.2000 0.0465 0.2391 3.9 8ffi:B, 8ffi:F, 8ffi:L, 8ffi:N, 8i87:F, 8i87:T, 8i87:B, 8i87:D, 8i88:B, 8j7s:A, 8j7s:E, 8j7s:I, 8j7s:M, 8jr8:A, 8jr8:C, 8oz6:D, 8oz6:F, 8oz6:H, 8ozd:B, 8ozd:D, 8oze:F, 8oze:H, 8ozf:B, 8ozf:E, 8ozf:G, 8ozf:M, 8ozg:B, 8ozg:E, 8ozg:G, 8ozg:M, 8ozi:B, 8ozi:D, 8ozi:F, 8ozi:H, 8sp0:B, 8sp0:F, 8sp3:B, 8sp3:F, 8spo:B, 8spo:F, 8spo:L, 8spo:N, 8squ:B
9 8agd:A 1111 36 0.1364 0.0135 0.4167 4.1 8acq:A, 8acq:C, 8acq:B, 8ae1:A, 8ae1:B, 8ae1:C, 8agd:C, 8agd:B, 7zgy:A, 7zgy:C, 7zgy:B
10 7mpo:F 207 48 0.1273 0.0676 0.2917 5.4 7mpl:A, 7mpl:E, 7mpl:C, 7mpl:I, 7mpl:G, 7mpl:K, 7mpl:O, 7mpl:M, 7mpm:A, 7mpm:E, 7mpm:C, 7mpm:I, 7mpm:G, 7mpm:K, 7mpm:O, 7mpm:M, 7mpn:A, 7mpn:C, 7mpn:E, 7mpn:G, 7mpn:I, 7mpn:K, 7mpn:M, 7mpn:O, 7mpo:A, 7mpo:B, 7mpo:C, 7mpo:D, 7mpo:E, 7mpo:G, 7mpo:H, 7mpp:A, 7mpp:E, 7mpp:G, 7mpp:C, 7mpp:K, 7mpp:I, 7mpp:M, 7mpp:O, 7mpq:G, 7mpq:K, 7mpq:A, 7mpq:E, 7mpq:C, 7mpq:I, 7mpq:O, 7mpq:M, 7mqb:A, 7mqb:C, 7mqb:E, 7mqb:G, 7mqb:I, 7mqb:K, 7mqb:M, 7mqb:O, 7mqc:A, 7mqc:C, 7mqc:E, 7mqc:G, 7mqc:I, 7mqc:K, 7mqc:M, 7mqc:O, 7mqd:A, 7mqd:C, 7mqd:E, 7mqd:G, 7mqd:I, 7mqd:K, 7mqd:M, 7mqd:O, 7mqe:A, 7mqe:C, 7mqe:E, 7mqe:G, 7mqe:I, 7mqe:K, 7mqe:M, 7mqe:O, 7mqf:A, 7mqf:C, 7mqf:E, 7mqf:G, 7mqf:I, 7mqf:K, 7mqf:M, 7mqf:O, 7mqg:A, 7mqg:C, 7mqg:E, 7mqg:G, 7mqg:I, 7mqg:K, 7mqg:M, 7mqg:O, 7mqh:A, 7mqh:C, 7mqh:E, 7mqh:G, 7mqh:I, 7mqh:K, 7mqh:M, 7mqh:O, 7mqi:A, 7mqi:C, 7mqi:E, 7mqi:G, 7mqi:I, 7mqi:K, 7mqi:M, 7mqi:O
11 5zo4:A 207 45 0.1182 0.0628 0.2889 6.6 5zo4:B, 5zo5:A, 5zo5:B
12 7w1m:E 1226 30 0.1000 0.0090 0.3667 7.1 6wg3:E, 6wge:E
13 4b98:A 441 23 0.1000 0.0249 0.4783 7.9 4b98:B, 4b98:C, 4b98:D, 4b9b:A, 4b9b:B, 4b9b:C, 4b9b:D, 4b9b:E, 4b9b:F, 4b9b:G, 4b9b:H, 4bq0:A, 4bq0:B, 4bq0:C, 4bq0:D
14 2azq:A 309 38 0.1273 0.0453 0.3684 9.5

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218