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BioLiP
>protein
GPHMLDNFMKQLLKLEESLNKLELEQKVTN

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5jge:D 30 30 1.0000 1.0000 1.0000 3.15e-15 5jge:E
2 4xai:A 565 21 0.2667 0.0142 0.3810 2.4 4xai:B
3 7u4o:A 150 14 0.3333 0.0667 0.7143 4.2 6mc1:A, 6mc1:B, 6mc1:C, 6mc1:D, 6mc1:E, 6mc1:F, 7u4o:F, 7u4o:B, 7u4o:D, 7u4o:C, 7u4o:E, 7u4r:A, 7u4r:B, 7u4r:C, 7u4r:D, 7u4r:E, 7u4r:F, 7umu:A, 7umu:B, 7umu:C, 7umu:D, 7umu:E, 7umu:F, 7umv:A, 7un0:A, 7un0:B, 7un0:C, 7un0:D, 7un0:E, 7un0:F, 7un4:A, 7un4:B, 7un4:C, 7un4:D, 7un4:E, 7un4:F
4 4izc:B 266 18 0.2667 0.0301 0.4444 8.1 4izc:A, 4izd:A, 4izd:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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