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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GNLAGAVEFNDVKTLLREWITTISDPMEEDILQVVKYCTDLIEEKDLEKLDLVIKYMKRLMQQSVESVWNMAFDFILDNV
QVVLQQTYGSTLKVT

The query sequence (length=95) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6c8c:A 119 94 0.9579 0.7647 0.9681 4.00e-63 6c8c:B, 4fjo:A, 4gk5:E, 2lsi:A, 2lsj:A, 2lsk:A, 2n1g:A
2 7kii:A 103 23 0.0947 0.0874 0.3913 0.16 7kij:C, 7kij:A
3 1cjy:A 633 69 0.1474 0.0221 0.2029 0.82 1bci:A, 1cjy:B, 1rlw:A
4 1cjy:A 633 30 0.1368 0.0205 0.4333 5.2 1bci:A, 1cjy:B, 1rlw:A
5 6fb3:A 1836 44 0.1474 0.0076 0.3182 1.6 6fb3:B, 6fb3:C, 6fb3:D, 6ska:A, 6ske:A, 6ske:C
6 4e6n:A 407 63 0.1895 0.0442 0.2857 2.2 4e6n:C, 3ty5:A, 3ty5:B, 3ty9:A, 3ty9:B, 3ty9:C, 3ty9:D
7 6zaz:A 555 48 0.1789 0.0306 0.3542 3.0 8aa0:B, 8aa0:J, 8aa1:B, 8aa1:J, 8aa2:B, 8aa2:J, 8aa3:B, 8aa3:J, 5t3r:A, 5t4y:A, 5t4y:B, 6z8i:A, 6z9a:A
8 5x7o:A 1247 32 0.1474 0.0112 0.4375 5.9 5x7o:B, 5x7p:B, 5x7p:A, 5x7q:A, 5x7q:B, 5x7r:A, 5x7r:B, 5x7s:A, 5x7s:B
9 8fru:k 76 43 0.1368 0.1711 0.3023 7.3 8br8:Ll, 8brm:Ll, 8bsi:Ll, 8bsj:Ll, 8btd:Ll, 8btr:Ll, 7pwg:k, 7pwo:k2
10 7zol:B 1702 57 0.1895 0.0106 0.3158 8.0 7zoq:B
11 1coz:A 126 68 0.2316 0.1746 0.3235 8.2 1coz:B, 1n1d:A, 1n1d:B, 1n1d:C, 1n1d:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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