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BioLiP
>protein
GLRQPAPFSDEIEVDFSKPYVRVTMEEACRGTPCERPVRVYADGIFDLFHSGHARALMQAKNLFPNTYLIVGVCSDELTH
NFKGFTVMNENERYDAVQHCRYVDEVVRNAPWTLTPEFLAEHRIDFVAHDDIPYSSAGSDDVYKHIKEAGMFAPTQRTEG
ISTSDIITRIVRDYDVYARRNLQRTAKELNVSFINEKKYHLQERVDKVKKKVKDVEEKSKEFVQKVEEKSIDLIWEEKSR
EFIGSFLEMFGP

The query sequence (length=252) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4mvd:B 253 254 0.9960 0.9921 0.9882 0.0 3hl4:A, 3hl4:B, 4mvc:A, 4mvc:B, 4mvd:A, 4mvd:D, 4mvd:C, 4mvd:F, 4mvd:E, 4mvd:H, 4mvd:G
2 4zcs:A 141 140 0.2857 0.5106 0.5143 1.24e-51 7pui:A, 7pve:A, 7pvf:A, 7pvg:A, 7py9:A, 7pya:A, 7pyb:A, 7pyc:A, 7q2i:A, 7q2k:A, 7q2l:A, 7q2m:A, 7q2v:A, 7q3m:A, 7q3w:A, 7q9v:A, 7q9w:A, 7qa7:A, 7qad:A, 7qd3:A, 7qvn:A, 7qvo:A, 7z9v:A, 4zcp:A, 4zcq:A, 4zcr:A, 4zcs:C, 4zcs:E, 4zcs:B, 4zcs:D, 4zcs:F
3 4xsv:A 306 137 0.2262 0.1863 0.4161 1.15e-26 3elb:A
4 4xsv:A 306 138 0.1944 0.1601 0.3551 1.50e-18 3elb:A
5 1coz:A 126 136 0.1865 0.3730 0.3456 2.89e-11 1coz:B, 1n1d:A, 1n1d:B, 1n1d:C, 1n1d:D
6 3glv:B 122 70 0.0873 0.1803 0.3143 3.41e-05
7 5x3d:A 126 98 0.1270 0.2540 0.3265 0.007
8 1v7v:A 779 113 0.1190 0.0385 0.2655 0.71 1v7w:A, 1v7x:A
9 5l4g:L 389 59 0.0635 0.0411 0.2712 1.0 5gjq:L, 5gjr:L, 5gjr:z, 5m32:f, 6msb:E, 6msd:E, 6mse:E, 6msg:E, 6msh:E, 6msj:E, 7qxn:E, 7qxp:E, 7qxu:E, 7qxw:E, 7qxx:E, 7qy7:E, 7qya:E, 5t0c:AE, 5t0c:BE, 5t0g:E, 5t0h:E, 5t0i:E, 5t0j:E, 5vfp:E, 5vfr:E, 5vfs:E, 7w37:E, 7w38:E, 7w39:E, 7w3a:E, 7w3b:E, 7w3c:E, 7w3f:E, 7w3i:E, 7w3j:E, 7w3k:E, 7w3m:E, 6wjd:E, 6wjn:E
10 7zc6:A 191 68 0.0794 0.1047 0.2941 1.1
11 4z9n:B 324 31 0.0516 0.0401 0.4194 1.2 4z9n:A, 4z9n:C, 4z9n:D, 4z9n:E, 4z9n:F
12 1mpa:H 225 36 0.0516 0.0578 0.3611 2.7 2mpa:H
13 8h2w:B 984 88 0.0754 0.0193 0.2159 6.4 8h2w:A, 5nz8:B
14 6tpq:B 183 33 0.0397 0.0546 0.3030 7.5 6tpq:A, 6z2b:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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