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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GKITVFAAASLTNAMQDIATQFKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLG
NSLVVVAPKASVQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKLGAWDTLSPKLAPAEDVRGALALVERN
EAPLGIVYGSDAVASKGVKVVATFPEDSHKKVEYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTIK

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1amf:A 231 231 1.0000 1.0000 1.0000 4.44e-170 3axf:A, 3axf:B, 3axf:C, 3r26:A, 1wod:A, 4xxu:A, 4xxu:B
2 8k8l:A 231 231 0.8571 0.8571 0.8571 3.03e-146
3 2h5y:B 233 232 0.5195 0.5150 0.5172 1.52e-72 3gzg:A, 3gzg:B, 3gzg:C, 2h5y:A, 2h5y:C
4 4rxl:A 229 226 0.4156 0.4192 0.4248 1.92e-59
5 4kd5:C 229 232 0.3680 0.3712 0.3664 3.79e-39
6 7tav:B 229 229 0.3463 0.3493 0.3493 9.80e-33 7tav:C, 7tav:F
7 7t5a:A 230 235 0.2944 0.2957 0.2894 1.49e-23 7t50:A, 7t50:B, 7t51:A, 7t51:B, 7t5a:B
8 1atg:A 231 236 0.2554 0.2554 0.2500 7.65e-10
9 3e13:X 317 53 0.0736 0.0536 0.3208 0.85 1y4t:A, 1y4t:D
10 1ve5:A 308 66 0.1082 0.0812 0.3788 1.2 1ve5:B
11 4bfe:A 188 81 0.0996 0.1223 0.2840 4.0 4bfe:B, 4bfe:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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