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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GKISILVLGADKAQGGQSRTDSIMVVQYDFINKKMKMMSVMRDIYADIPGYGKHKINSAYALGGPELLRKTLDKNLGINP
EYYAVVDFTGFEKMIDELMPEGVPINVEKDMSKNIGVSLKKGNHRLNGKELLGYARFRHDPEGDFGRVRRQQQVMQTLKK
EMVNFRTVVKLPKVAGILRGYVNTNIPDSGIFQTGLSFGIRGEKDVKSLTVPIKNSYEDVNTNTDGSALQINKNTNKQAI
KDFLDED

The query sequence (length=247) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6uex:A 247 247 1.0000 1.0000 1.0000 0.0
2 6mps:A 255 163 0.2389 0.2314 0.3620 3.02e-23 4de9:A, 6mpt:A
3 4de8:A 374 175 0.1943 0.1283 0.2743 3.98e-09 3tel:A, 3tep:A, 3tfl:A, 2xxp:A, 2xxq:A
4 5v8c:A 272 140 0.1579 0.1434 0.2786 2.69e-05
5 3ob8:A 1024 68 0.0891 0.0215 0.3235 0.14 3ob8:B, 3ob8:D, 3ob8:C, 3oba:A, 3oba:C, 3oba:D, 3oba:B
6 8bn5:B 267 96 0.1093 0.1011 0.2812 0.35 8blj:A, 8blj:B, 8blj:C, 8blj:D, 8blj:E, 8blj:F, 8bn2:A, 8bn2:B, 8bn5:A
7 5v95:A 592 74 0.0972 0.0405 0.3243 2.0
8 7bqk:A 459 119 0.1215 0.0654 0.2521 2.1 7bqk:B, 7bql:A, 7bql:B
9 3dt7:A 624 79 0.1012 0.0401 0.3165 2.2 3dt2:A, 3dt4:A, 3dt4:C, 3dt7:B, 3dtb:A, 3dtb:B, 5fh0:A, 5fh1:A, 5fh2:A, 5fh3:A, 5fh4:A, 5fh5:A, 2gmv:A, 2gmv:B, 4gmm:A, 4gmu:A, 4gmw:A, 4gmz:A, 4gnl:A, 4gnm:A, 4gno:A, 4gnp:A, 4gnq:A, 1khb:A, 1khe:A, 1khf:A, 1khg:A, 7l36:A, 7l3m:A, 7l3v:A, 1m51:A, 3moe:A, 3mof:A, 3mof:B, 3moh:A, 3moh:B, 1nhx:A, 4ox2:A, 4ox2:B, 6p5o:A, 2qew:A, 2qey:A, 2qf1:A, 2qf2:A, 2qf2:B, 2rk7:A, 2rk7:B, 2rk8:A, 2rk8:B, 2rka:A, 2rka:C, 2rkd:A, 2rke:A, 5v97:A, 5v9f:A, 5v9g:A, 5v9h:A, 5v9h:B, 4yw8:A, 4yw9:A, 4ywb:A, 4ywb:C, 4ywd:A
10 1brw:A 433 54 0.0607 0.0346 0.2778 3.1 1brw:B
11 7yp9:C 1230 97 0.1134 0.0228 0.2887 3.2
12 4ci0:A 385 47 0.0526 0.0338 0.2766 3.5 4omf:A
13 5e1q:B 644 65 0.0688 0.0264 0.2615 3.9 3a24:A, 3a24:B, 5e1q:A
14 8j3y:A 392 64 0.0648 0.0408 0.2500 4.4 8j3x:A, 8j3x:B, 8j3y:B
15 7pnt:G 325 70 0.0688 0.0523 0.2429 5.0 7pnu:G, 7pnv:G, 7pnw:G
16 7udu:D 701 71 0.0810 0.0285 0.2817 7.1 7rb8:D
17 1jju:B 337 29 0.0486 0.0356 0.4138 8.0 1pby:B
18 7m7k:B 432 61 0.0729 0.0417 0.2951 8.0
19 5k1s:A 358 32 0.0648 0.0447 0.5000 8.3 5k1s:C, 5k1s:B, 5k1s:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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