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BioLiP
>protein
GKIILFEDVEFGGKKLELETSVSDLNVHGFNDIVSSIIVESGTWFVFDDEGFSGPSYKLTPGKYPNPGSWGGNDDELSSV
KQQ

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2bv2:A 83 83 1.0000 1.0000 1.0000 2.20e-55 2bv2:B
2 4iau:A 161 79 0.3253 0.1677 0.3418 1.00e-10
3 2k1w:A 85 84 0.3735 0.3647 0.3690 6.93e-09 5ht9:A, 5ht9:B, 3hz2:A, 3hz2:B, 3hz2:C, 3hz2:D
4 1hdf:A 100 82 0.3012 0.2500 0.3049 0.001 1hdf:B
5 1hdf:A 100 42 0.2048 0.1700 0.4048 0.011 1hdf:B
6 5ht7:A 82 72 0.2530 0.2561 0.2917 0.005 5ht7:B, 5ht7:C
7 3hzb:D 90 43 0.2048 0.1889 0.3953 2.3 3hzb:A, 3hzb:B, 3hzb:C, 3hzb:E, 3hzb:F, 3hzb:G, 3hzb:H
8 3ayx:A 595 34 0.1687 0.0235 0.4118 3.8 3ayx:C, 3ayz:A, 3ayz:C, 5y34:A, 5y34:C
9 1kib:A 89 22 0.1084 0.1011 0.4091 4.1 1f1f:A, 1kib:B, 1kib:C, 1kib:D, 1kib:E, 1kib:F, 1kib:G, 1kib:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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