Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GKHTVPYTISVDGITALHRTYFVFPENKKVLYQEIDSKVKNELASQRGVTTEKINNAQTATYTLTLNDGNKKVVNLKKND
DAKNSIDPSTIKQIQIVVK

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1yn4:A 99 99 1.0000 1.0000 1.0000 2.73e-68
2 4hnd:A 353 79 0.2121 0.0595 0.2658 0.90 4hnd:B, 4hne:A, 4hne:B
3 8q3v:B 70 31 0.1111 0.1571 0.3548 1.9 8q3v:R, 8q3v:b, 8q54:B, 8q54:b, 8q54:R
4 4ttv:A 403 59 0.2020 0.0496 0.3390 2.6 4hwt:A, 4hwt:B, 4p3n:A, 4p3n:B, 4p3n:C, 4p3n:D, 4ttv:B, 4ttv:C, 4ttv:D
5 4h5f:A 240 29 0.1313 0.0542 0.4483 5.7 4h5f:B, 4h5f:C, 4h5f:D, 4h5g:A, 4h5g:B
6 1k63:A 295 31 0.1111 0.0373 0.3548 7.8 2bfn:A, 1d07:A, 1g42:A, 1g4h:A, 1g5f:A, 4h77:A, 4h7d:A, 4h7e:A, 4h7f:A, 4h7h:A, 4h7i:A, 4h7j:A, 4h7k:A, 1iz7:A, 1iz8:A, 1k6e:A
7 7nf6:A 623 77 0.2222 0.0353 0.2857 8.6 7nf7:A, 7nf8:A
8 3tqx:A 396 67 0.1818 0.0455 0.2687 9.9 3tqx:B

[Back]
Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218