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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GKGAAKYGFKSGVFPTTRSILKSPTTKQTDIINKVKSPKPKGVLGIGYAKGVKHPKGSHRLSPKVNFIDVDNLIAKTVAE
PQSIKSSNGSAQKVRLQKAELRRKFLIEAFRKEEARLLHKHEYLQKRTKELEKAKELELEKLNKEKSSDLTIMTLDKMMS
QPLLRNRSPEESELLKLKRNYNRSLLNFQAHKKKLNELLNLYHVANEFIVTESQLLKKIDKVFNDETEEFTDA

The query sequence (length=233) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8om2:V 286 233 1.0000 0.8147 1.0000 3.80e-170 8d8j:V, 8d8k:V, 8d8l:V, 5mrc:VV, 5mre:VV, 5mrf:VV, 8om3:V, 8om4:V
2 6hc6:C 408 142 0.1588 0.0907 0.2606 0.67 6hc6:A, 6hc6:B, 6hc7:A, 6hc7:B, 6hc7:C
3 2e37:C 310 72 0.0944 0.0710 0.3056 2.8 2e37:A, 2e37:E, 2e37:G, 2v7p:A, 2v7p:B, 2v7p:C, 2v7p:D, 3vph:A, 3vph:D, 3vph:B, 3vph:C, 2xxb:A, 2xxb:B, 2xxj:B, 2xxj:D, 3zzn:A, 3zzn:D
4 3q6d:A 355 107 0.1116 0.0732 0.2430 6.1 3q6d:B, 3q6d:C, 3q6d:D
5 3cnl:A 233 34 0.0558 0.0558 0.3824 7.3 3cnn:A, 3cno:A
6 2zuy:A 604 59 0.0687 0.0265 0.2712 9.3
7 5xf9:D 455 39 0.0472 0.0242 0.2821 9.6 5xf9:H, 5xfa:D, 5xfa:H

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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