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BioLiP
>protein
GKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHE
LDACVMDGNTLKAGAVAGVSHLRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFSTSLRYEQLLAARKE

The query sequence (length=158) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1jn9:A 158 158 1.0000 1.0000 1.0000 8.29e-114 8c0i:AAA
2 2gez:C 166 154 0.4241 0.4036 0.4351 4.20e-32 2gez:A, 2gez:E, 2gez:G
3 4pv2:C 158 145 0.3734 0.3734 0.4069 1.91e-29 4pu6:A, 4pu6:C, 4pv2:A, 4pv3:A, 4pv3:C
4 4osx:A 300 150 0.3608 0.1900 0.3800 1.45e-24 4o0d:A, 4o0d:B, 4o0f:A, 4o0f:B, 4o0h:A, 4o0h:B, 4osx:B, 4osy:A, 4osy:B, 4pvr:A, 4pvr:B, 4pvs:A, 4pvs:B, 4zm9:A, 4zm9:B, 4zm9:C, 4zm9:D
5 4o48:A 298 155 0.3608 0.1913 0.3677 6.46e-21 4o48:B
6 1p4v:A 295 109 0.3038 0.1627 0.4404 8.83e-21 9gac:A, 9gac:C, 9gaf:A, 9gaf:C, 2gl9:B, 2gl9:D, 3ljq:C, 1p4v:C, 4r4y:A
7 2a8j:B 313 143 0.2911 0.1470 0.3217 2.37e-13 2a8j:A, 2a8m:A
8 3zkn:A 375 64 0.1329 0.0560 0.3281 0.55 7d5b:A, 7d5u:A, 2ewy:A, 2ewy:B, 2ewy:C, 2ewy:D, 7f1g:A, 6jsz:A, 7n4n:A, 6uj0:A, 6uj0:B, 6uj1:A, 6uj1:B, 3zki:A, 3zki:B, 3zkn:B, 3zks:A, 3zlq:A, 3zlq:B
9 7jil:M 139 31 0.0823 0.0935 0.4194 2.1
10 8fl4:SR 593 38 0.0886 0.0236 0.3684 3.9 8fkr:SR, 8fks:SR
11 1wni:A 198 50 0.1013 0.0808 0.3200 4.0
12 8ir1:4 620 38 0.0886 0.0226 0.3684 4.1 8fkt:SR, 8fku:SR, 8fkv:SR, 8fkw:SR, 8fkx:SR, 8fky:SR, 8fkz:SR, 8fl0:SR, 8fl2:SR, 8fl3:SR, 8fl6:SR, 8fl7:SR, 8fl9:SR, 8fla:SR, 8flb:SR, 8flc:SR, 8fld:SR, 8fle:SR, 8flf:SR, 8idt:4, 8idy:4, 8ie3:4, 8ine:4, 8inf:4, 8ink:4, 8ipd:4, 8ipx:4, 8ipy:4, 8ir3:4, 6lss:4, 6lu8:4
13 5zq6:A 828 44 0.0759 0.0145 0.2727 4.7 5zq4:B, 5zq4:A, 5zq6:C, 5zq7:A, 5zq7:C
14 7qfx:C 413 46 0.0949 0.0363 0.3261 7.1 7qfx:B, 7qfx:E, 7qfx:G

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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