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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GIPGTTTPITKEMEPNDDIKEANGPIVEGVTVKGDLNGSDDADTFYFDVKEDGDVTIELPYSGSSNFTWLVYKEGDDQNH
IASGIDKNNSKVGTFKSTKGRHYVFIYKHDSASNISYSLNIKGLGNEKLKEKENNDSSDKATVIPNFNTTMQGSLLGDDS
RDYYSFEVKEEGEVNIELDKKDEFGVTWTLHPESNINDRITYGQVDGNKVSNKVKLRPGKYYLLVYKYSGSGNYELRVNK

The query sequence (length=240) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 5iku:A 240 240 1.0000 1.0000 1.0000 4.82e-176 4hpk:A, 4hpk:B, 1nqd:A, 1nqd:B, 2o8o:A, 2o8o:B
2 3jqw:C 121 117 0.1875 0.3719 0.3846 5.81e-18 3jqw:A, 3jqw:B, 3jqx:A, 3jqx:B, 3jqx:C
3 3jqw:C 121 104 0.1458 0.2893 0.3365 2.60e-11 3jqw:A, 3jqw:B, 3jqx:A, 3jqx:B, 3jqx:C
4 4lhu:G 227 54 0.0708 0.0749 0.3148 0.053
5 7zkq:b 66 21 0.0458 0.1667 0.5238 0.35 7o6y:b, 7o71:b, 6rfq:b, 6rfr:b, 6y79:b, 7zkp:b
6 4gdz:A 149 52 0.0792 0.1275 0.3654 1.1
7 1h1a:A 191 40 0.0500 0.0628 0.3000 1.8 1h1a:B, 1xnk:A, 1xnk:B
8 4wzf:B 241 59 0.0792 0.0788 0.3220 2.8 4wzf:A
9 8ajz:B 167 68 0.0833 0.1198 0.2941 3.0 3bvd:B, 2cua:A, 2cua:B, 1ehk:B, 3eh3:B, 3eh4:B, 3eh5:B, 4fa7:B, 4faa:B, 2fwl:B, 4g70:B, 4g71:B, 4g72:B, 4g7q:B, 4g7r:B, 4g7s:B, 4gp4:B, 4gp5:B, 4gp8:B, 8hua:B, 8k65:B, 8k6y:B, 4n4y:B, 5ndc:B, 3qjq:B, 3qjr:B, 3qjs:B, 3qjt:B, 3qju:B, 3qjv:B, 2qpd:B, 2qpe:B, 3s33:B, 3s38:B, 3s39:B, 3s3a:B, 3s3b:B, 3s3c:B, 3s3d:B, 3s8f:B, 3s8g:B, 5u7n:A, 5u7n:B, 5u7n:C, 5u7n:D, 5u7n:E, 5u7n:F, 5u7n:G, 5u7n:H, 1xme:B
10 4wsi:A 372 121 0.1083 0.0699 0.2149 4.7 7m4r:A, 7ntj:B, 7ntj:A, 7ntk:A, 7ntk:D, 7ntk:B, 7ntk:F, 7qcs:A, 7qcs:B, 4uu5:A, 4wsi:B
11 7x4g:A 297 40 0.0667 0.0539 0.4000 5.8
12 2gkd:A 155 50 0.0667 0.1032 0.3200 7.9 2l65:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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