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BioLiP
>protein
GHMKVKLSAKEILEKEFKTGVRGYKQEDVDEFLDMIIKDYETFHQEIEELQQENLQLKKQLEE

The query sequence (length=63) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6gpz:A 63 63 1.0000 1.0000 1.0000 4.56e-39 6gp7:B, 6gpz:B
2 8e2c:A 65 63 0.5397 0.5231 0.5397 1.50e-13
3 6gqn:B 62 55 0.4603 0.4677 0.5273 4.70e-13 6gqn:A
4 3uw2:A 458 31 0.1905 0.0262 0.3871 0.52
5 2y5b:E 325 49 0.2698 0.0523 0.3469 1.3 3i3t:A, 3i3t:C, 3i3t:E, 3i3t:G, 3mtn:A, 3mtn:C, 2y5b:A
6 2j22:A 137 28 0.1905 0.0876 0.4286 1.9
7 4im0:A 619 30 0.2063 0.0210 0.4333 2.4 6bny:A, 6bod:A, 6boe:A, 6cq0:A, 6cq4:A, 6cq5:A, 4im2:A, 4im3:A, 6nt9:A, 6nt9:B, 5w5v:A
8 6o8b:B 657 30 0.2063 0.0198 0.4333 2.5 4eut:A, 4eut:B, 4euu:A, 4euu:B, 4iw0:A, 4jl9:A, 4jlc:A, 6o8b:A, 6o8c:B
9 2hd5:A 315 53 0.2222 0.0444 0.2642 2.5
10 8ia3:E 111 25 0.1905 0.1081 0.4800 3.1 8ia3:A, 8ia3:B, 8ia3:F
11 4bga:C 322 31 0.1746 0.0342 0.3548 3.4 4bg8:A, 4bg8:B, 4bg9:A, 4bga:A, 4bga:D, 4bga:B, 4bgb:A, 4bgb:B
12 7mqa:SC 229 19 0.1270 0.0349 0.4211 5.0 2ipx:A, 7se7:A, 7se8:A, 7se8:B, 7se9:A, 7se9:B, 7sea:A, 7seb:A, 7sec:A, 7sec:B, 7sed:A
13 3c1y:A 349 29 0.1905 0.0344 0.4138 5.5 3c1y:B, 3c21:A, 3c21:B, 3c23:A, 3c23:B, 4yvz:A, 4yvz:B, 4yxj:A, 4yxj:B, 4yxm:A, 4yxm:B
14 3nhe:A 338 42 0.2063 0.0385 0.3095 5.6 6dgf:A, 2ibi:A, 3v6c:A, 3v6e:A, 5xu8:A, 5xve:A
15 3oja:B 534 19 0.1587 0.0187 0.5263 5.6
16 3d3h:A 174 24 0.1746 0.0632 0.4583 5.8
17 8bob:A 390 34 0.2063 0.0333 0.3824 8.4 8bob:B, 1d2f:A, 1d2f:B
18 2ood:A 463 28 0.1746 0.0238 0.3929 8.6
19 5xyf:A 192 31 0.1587 0.0521 0.3226 9.0

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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