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BioLiP
>protein
GHMDRFTGGCLCGKVRLVASGRPYRVGLCHCLDCRKHHGALFHASAIFPEEAVSIEGETRDYAGRFFCPQCGSSVFSRSA
DEIEVSLGALDAPDRFQPTYELWTVRREGWLPAFPLARHYERDREGDGRSEE

The query sequence (length=132) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8ajq:A 132 132 1.0000 1.0000 1.0000 1.50e-95 8ajq:B, 8ajq:C, 8ajq:D, 8ajq:E, 8ajq:F, 8ajq:G, 8ajq:H
2 6tyw:A 218 51 0.1439 0.0872 0.3725 0.37 6tyt:A, 6tyu:A, 6tyv:A, 6tyx:A, 6tyx:B, 6tyz:A
3 8v6g:A 1050 35 0.0985 0.0124 0.3714 1.8 8v6h:A, 8v6i:A, 8v6j:A
4 8g99:A 1063 35 0.0985 0.0122 0.3714 1.8 8g9f:A, 8g9l:A, 8g9n:A, 8g9o:A, 8ucu:A, 8ucv:A, 8ucw:A, 8v5m:A, 8v5n:A, 8v5o:A
5 3pih:A 836 42 0.1061 0.0167 0.3333 3.7
6 2cy2:A 174 67 0.1591 0.1207 0.3134 4.1
7 5hh9:A 390 61 0.1439 0.0487 0.3115 5.2 5hh9:B, 5i90:A, 5i90:B
8 4unm:B 609 27 0.0682 0.0148 0.3333 5.7 5lxz:B, 4unm:A
9 1x6m:A 196 55 0.1136 0.0765 0.2727 6.4 1x6m:B, 1x6m:C, 1x6m:D, 1xa8:A, 1xa8:B, 1xa8:C, 1xa8:D
10 6sw9:C 61 23 0.0682 0.1475 0.3913 9.2 6swc:C, 6swd:C, 7zag:C, 7zah:C, 7zai:C, 7zhg:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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