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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
>protein
GGVIKSIFTFVLIVEFIIGNLGNSFIALVNCIDWVKGRKISSVDRILTALAISRISLVWLIFGSWCVSVFFPALFATEKM
FRMLTNIWTVINHFSVWLATGLGTFYFLKIANFSNSIFLYLKWRVKKVVLVLLLVTSVFLFLNIALINIHINASINGYRR
NFTRFSSLIVLTSTVFIFIPFTLSLAMFLLLIFSMWKHRKKMQHTVKDASTKAHRGVKSVITFFLLYAIFSLSFFISVWT
SERLEENLIILSQVMGMAYPSCHSCVLILGNKKLRQASLSVLLWLR

The query sequence (length=286) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8vy9:R 290 289 0.9860 0.9724 0.9758 0.0 9iiw:R, 9iix:R, 9ij9:R, 9ija:R, 8vy7:R, 8xql:R, 8xqn:R, 8xqo:R, 8xqp:R, 8xqr:R, 8xqs:R, 8xqt:R, 8yky:R
2 7xp6:R 283 286 0.4685 0.4735 0.4685 5.13e-66
3 6lkn:A 1064 89 0.0909 0.0244 0.2921 0.98 6lkn:E, 6lkn:I, 6lkn:M
4 5lwe:B 285 212 0.1678 0.1684 0.2264 0.98 5lwe:A
5 7bsp:A 1028 89 0.0909 0.0253 0.2921 1.0 7bsq:A, 7vsh:A
6 7q6n:D 204 33 0.0455 0.0637 0.3939 2.4 3b6i:A, 3b6i:B, 3b6j:A, 3b6j:B, 3b6k:A, 3b6k:B, 3b6m:A, 3b6m:B, 4dy4:A, 4dy4:C, 5f12:A, 5f12:B, 7q6n:A, 7q6n:B, 7q6n:C, 2r96:A, 2r96:C, 2r97:A, 2r97:C, 4yqe:A, 4yqe:B, 3zho:A, 3zho:B
7 7yw4:A 120 65 0.0804 0.1917 0.3538 5.3

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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