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BioLiP
>protein
GGSGQHCQVEHCRQRDFLPFVCDDCSGIFCLEHRSRESHGCPEV

The query sequence (length=44) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7yab:A 44 44 1.0000 1.0000 1.0000 4.77e-27
2 1wys:A 75 41 0.8182 0.4800 0.8780 2.70e-22
3 5ij4:A 49 38 0.4545 0.4082 0.5263 2.34e-06
4 1x4v:A 63 37 0.3182 0.2222 0.3784 5.66e-04
5 7y7l:A 45 44 0.2955 0.2889 0.2955 0.001
6 1yio:A 198 18 0.2500 0.0556 0.6111 0.18 1zn2:A
7 1wfe:A 86 38 0.2500 0.1279 0.2895 0.30
8 8fr7:A 1275 26 0.2500 0.0086 0.4231 2.1 8fr7:C, 8fr7:B
9 1dbg:A 481 20 0.1818 0.0166 0.4000 2.9 1dbo:A, 1ofl:A, 1ofm:A
10 1wfh:A 64 30 0.2955 0.2031 0.4333 3.2
11 6ik5:A 705 19 0.1818 0.0113 0.4211 5.8 6ik5:B, 6ik6:A, 6ik6:B, 6ik7:B, 6ik7:A, 6ik8:B, 6ik8:A, 3w5f:A, 3w5g:A, 3w5g:B
12 1wff:A 85 17 0.2045 0.1059 0.5294 5.8
13 5c56:A 528 12 0.1591 0.0133 0.5833 6.8 5c6d:A, 5c6d:B, 5gg4:A, 5gg4:B, 5gg4:C, 5gg4:D, 6p5l:A, 4wph:B, 4wph:A, 4wpi:B, 4wpi:A, 7xpy:A, 4z96:A, 4z97:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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