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BioLiP
>protein
GGLPSLKSSFVLSESTVPGTNETVKTFLPYGSVINYYGYVKPGQAPDGLVDGNKKAYYLYVWIPAVIAEMGVRMISPTGE
IGEPGDGDLVSDAFKAATPEEKSMPHWFDTWIRVERMSAIMPDQIAKAAKAKPVQKLDDDDDGDDTYKEERHNKYNSLTR
IIDTKKLLVRGLYRISFTTYKPGEVKGSFVASVGLLFPPGIPGVSPLIHSNPEELQKQAIAAEESLKKAAS

The query sequence (length=231) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 2wfk:A 255 245 1.0000 0.9059 0.9429 1.65e-166 3frl:A, 3frl:B, 2wfk:B, 2wfk:C, 2wfk:D, 2wfk:E
2 6rf0:C 275 52 0.0736 0.0618 0.3269 0.90 8cl7:A, 8cl8:A, 7q36:A, 6rex:A, 6rex:B, 6rex:C, 6rex:D, 6rex:E, 6rez:A, 6rez:B, 6rez:C, 6rez:D, 6rez:E, 6rf0:A, 6rf0:E, 6rf0:B, 6rf0:D, 6rf1:A, 6rf1:E, 6rf1:B, 6rf1:C, 6rf1:D, 6rf3:A, 6rf3:B, 6rf3:C, 6rf3:D, 6rf3:E, 6rf4:A, 6rf4:B, 6rf4:C, 6rf4:D, 6rf4:E, 6rf5:A, 6rf6:A, 6rf7:A, 6rf9:A, 6rfa:A, 6rfb:A, 6rfc:A, 6tk1:A, 6tk2:A, 6tk3:A, 6tk4:A, 6tk5:A, 6tk6:A, 6tk7:A, 3x3b:A, 3x3c:A, 4xtl:A, 4xtn:A, 4xtn:B, 4xtn:C, 4xtn:D, 4xtn:E, 4xtn:F, 4xtn:G, 4xtn:H, 4xtn:I, 4xtn:J, 4xto:A, 4xto:B, 4xto:C, 4xto:D, 4xto:E, 6xyt:A, 6xyt:B, 6xyt:C, 6xyt:D, 6xyt:E, 6yby:A, 6ybz:A, 6ybz:B, 6ybz:C, 6ybz:D, 6ybz:E, 6yc0:A, 6yc0:B, 6yc0:C, 6yc0:D, 6yc0:E, 6yc1:A, 6yc1:B, 6yc1:C, 6yc1:D, 6yc1:E, 6yc2:A, 6yc2:B, 6yc2:C, 6yc2:D, 6yc2:E, 6yc3:A, 6yc3:B, 6yc3:C, 6yc3:D, 6yc3:E, 6yc4:A, 6yc4:B, 6yc4:C, 6yc4:D, 6yc4:E, 6yt4:A, 6yt4:B, 6yt4:D, 6yt4:E, 6yt4:C
3 5n6n:C 698 71 0.0866 0.0287 0.2817 1.7 5m4a:A
4 3sqg:A 578 32 0.0563 0.0225 0.4062 2.2 3sqg:D, 3sqg:G
5 3gg2:A 431 24 0.0563 0.0302 0.5417 4.2 3gg2:D, 3gg2:B, 3gg2:C
6 3ai8:B 256 57 0.0823 0.0742 0.3333 4.4 3ai8:A, 6ay2:A, 6ay2:B, 8b4t:A, 8b5f:A, 1csb:A, 1csb:B, 1csb:D, 1csb:E, 1gmy:A, 1gmy:B, 1gmy:C, 8he9:A, 8hei:A, 8hen:A, 2ipp:A, 1sp4:A
7 7nky:O 427 68 0.0779 0.0422 0.2647 5.0
8 5cio:A 770 28 0.0563 0.0169 0.4643 6.5 5cio:B
9 8xgc:M 379 68 0.0779 0.0475 0.2647 7.3
10 7ksf:A 742 116 0.1385 0.0431 0.2759 8.8
11 7e8p:D 482 37 0.0563 0.0270 0.3514 9.8 7e8p:A, 7e8p:B, 7e8p:C, 7e8q:A, 7e8q:B, 7e8q:C, 7e8q:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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