Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GGGARSGDDVVAKYCNACHGTGLLNAPKVGDSAAWKTRADAKGGLDGLLAQSLSGLNAMPPKGTCADCSDDELKAAIGKM
SGL

The query sequence (length=83) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 1cc5:A 83 83 1.0000 1.0000 1.0000 1.05e-54
2 5b6q:A 76 77 0.4096 0.4474 0.4416 3.24e-16 5b6q:B, 6k7c:A, 6k7c:C
3 1kx2:A 81 77 0.3855 0.3951 0.4156 1.01e-15 1kx7:A
4 8hn3:A 80 62 0.3614 0.3750 0.4839 8.48e-13 8hn3:B
5 2zon:G 81 76 0.3855 0.3951 0.4211 1.37e-10
6 4j20:A 88 72 0.3373 0.3182 0.3889 8.11e-10 4j20:B
7 1gks:A 78 70 0.2892 0.3077 0.3429 0.001
8 5djq:C 303 35 0.1687 0.0462 0.4000 0.55 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
9 5djq:C 303 41 0.1687 0.0462 0.3415 6.7 5djq:M, 5djq:F, 5djq:I, 3mk7:C, 3mk7:M, 3mk7:F, 3mk7:I
10 2zbo:A 86 70 0.2410 0.2326 0.2857 3.0 2zbo:C, 2zbo:E, 2zbo:G, 2zbo:I, 2zbo:K
11 1ar4:A 201 47 0.2048 0.0846 0.3617 3.8 1ar4:B, 1ar5:A, 1ar5:B, 1avm:A, 1avm:B, 1bs3:A, 1bs3:B, 1bsm:A, 1bsm:B, 1bt8:A, 1bt8:B
12 8snh:G 304 41 0.1566 0.0428 0.3171 5.3
13 6h5l:B 220 52 0.1687 0.0636 0.2692 5.8
14 4z8w:A 125 12 0.0843 0.0560 0.5833 6.0
15 5wlw:D 128 26 0.1325 0.0859 0.4231 7.9
16 5xlk:C 185 78 0.2651 0.1189 0.2821 8.1
17 6ud7:A 426 15 0.0964 0.0188 0.5333 8.7 6pai:C, 6q0r:B, 6q0r:C, 6q0v:B, 6q0w:B, 6ue5:A

[Back]

Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218