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BioLiP
>protein
GEWEIIDIGPFTQNLGKFAVDEENKIGQYGRLTFNKVIRPCMKKTIQVPAGYEYQLYVYASDKLFRADISEDYKTRGRKL
LRFNGPVPPP

The query sequence (length=90) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7d75:A 90 90 0.9556 0.9556 0.9556 9.72e-60 7d75:B, 7d75:C, 6l4n:A
2 8opr:A 651 42 0.1667 0.0230 0.3571 0.27
3 5nj5:A 480 42 0.1333 0.0250 0.2857 0.87 5nj5:C, 5nj9:A, 5nj9:C, 5nja:A, 5nja:C, 5njb:A, 5njb:C, 5njc:A, 5njc:C, 5njf:A, 5njf:C
4 6he8:I 390 43 0.1667 0.0385 0.3488 1.7 6he4:H, 6he4:I, 6he4:J, 6he4:K, 6he4:L, 6he8:J, 6he8:K, 6he8:L, 6he8:M, 6he9:H, 6he9:I, 6he9:J, 6he9:K, 6he9:L, 6hea:H, 6hea:I, 6hea:J, 6hea:K, 6hea:L, 6hea:M, 6hec:H, 6hec:I, 6hec:J, 6hec:L, 6hec:M, 6hed:H, 6hed:I, 6hed:K, 6hed:L, 6hed:M
5 1z72:B 215 33 0.1556 0.0651 0.4242 1.8
6 3wh2:A 132 27 0.1111 0.0758 0.3704 6.7 3wh3:A
7 8h4v:A 148 26 0.1000 0.0608 0.3462 8.9 8h4v:B, 8hb5:A, 5kth:A, 5kti:A, 4kzv:A, 4kzv:B, 4kzw:A, 4kzw:B, 4zrv:A, 4zrv:C, 4zrv:B, 4zrw:A
8 1zno:B 165 76 0.2333 0.1273 0.2763 9.0
9 3aae:B 264 33 0.1333 0.0455 0.3636 9.1 3aa0:B, 3aa1:B, 3aa6:B, 3aae:D, 3aae:F, 3aae:H, 3aae:J, 7ds2:B, 7ds3:B, 7ds4:B, 7ds6:B, 7ds8:B, 7dsb:B, 3lk4:B, 3lk4:E, 3lk4:H, 3lk4:K, 3lk4:N, 3lk4:Q, 3lk4:T, 3lk4:W, 3lk4:Z, 3lk4:2, 3lk4:5, 3lk4:8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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