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BioLiP
>protein
GELGGLKQELGGLKWELGGLKEELGGLKYG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bfe:B 30 30 1.0000 1.0000 1.0000 1.36e-11 8bfe:N
2 8b45:B 30 30 0.6333 0.6333 0.6333 2.21e-06 8b45:C, 8b45:D
3 3r4a:B 30 30 0.5000 0.5000 0.5000 2.40e-04 3r4a:C, 3r4h:B, 3r4h:C
4 4dzl:F 32 30 0.3667 0.3438 0.3667 2.82e-04 4dzl:I, 4dzl:E, 4dzl:H, 4dzl:C, 4dzl:J, 4dzl:K
5 6i1j:A 30 30 0.3667 0.3667 0.3667 0.016
6 7q1s:J 30 26 0.3333 0.3333 0.3846 0.97 7q1s:N, 7q1s:F
7 7q1s:J 30 18 0.2333 0.2333 0.3889 4.4 7q1s:N, 7q1s:F
8 8f5o:B 1134 18 0.2667 0.0071 0.4444 1.7 8f5p:B
9 8fgw:A 1081 22 0.4000 0.0111 0.5455 2.5
10 5odc:C 184 26 0.4000 0.0652 0.4615 3.8 5odc:I, 5odh:C, 5odh:I, 5odi:C, 5odi:I, 5odq:C, 5odq:I, 5odr:C, 5odr:I
11 4h8g:F 30 30 0.3667 0.3667 0.3667 4.4 4h8g:H
12 7q1s:E 30 18 0.2333 0.2333 0.3889 6.8 7q1s:M, 7q1s:A
13 2v4j:B 380 30 0.3667 0.0289 0.3667 7.6 2v4j:E
14 2d0f:A 637 19 0.3000 0.0141 0.4737 8.9 2d0g:A, 2d0h:A, 1izj:A, 1izk:A, 1ji1:A, 1ji1:B, 1uh2:A, 1uh3:A, 1uh4:A, 5z0t:A, 5z0t:B, 5z0u:A
15 2vvg:B 309 20 0.3000 0.0291 0.4500 9.4 2vvg:A
16 2ce7:D 413 21 0.3000 0.0218 0.4286 9.9 2ce7:A, 2ce7:B, 2ce7:E, 2ce7:F, 2cea:A, 2cea:B, 2cea:D, 2cea:E, 2cea:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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