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BioLiP
>protein
GEIVYLPNLNPDQLCAFIHSLHDDPSQSANLLAEAKKLNDAQA

The query sequence (length=43) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4bxl:A 46 43 0.9302 0.8696 0.9302 2.67e-24 4bxl:B, 5k5g:B, 5k5g:C, 2otk:E, 2otk:F
2 5h75:D 225 42 0.7907 0.1511 0.8095 7.65e-16 5h75:A, 5h75:B, 5h75:C, 1p3y:1
3 5coc:A 124 42 0.7674 0.2661 0.7857 9.66e-16
4 8cpl:C 499 42 0.7907 0.0681 0.8095 1.36e-15 8cpl:A, 8cpl:B, 8cpl:D, 1lp1:B, 4uox:A, 4uox:B, 4uox:C, 4uox:D, 4uoy:A, 4uoy:B, 4uoy:C, 4uoy:D
5 5cbn:A 176 41 0.7674 0.1875 0.8049 2.33e-15
6 5h7d:E 113 42 0.7442 0.2832 0.7619 4.14e-15 5h7d:F, 5h7d:G, 5h7d:H, 5h7d:K, 5h7d:L, 5h7d:O, 5h7d:P
7 5ewx:B 214 42 0.6977 0.1402 0.7143 2.08e-13 5ewx:A
8 6fgo:F 67 53 0.6744 0.4328 0.5472 3.28e-10 6fgo:E, 6fgo:G, 6fgo:H
9 7rxc:B 439 43 0.5581 0.0547 0.5581 4.00e-09 7rxd:B
10 8jxr:C 341 43 0.5581 0.0704 0.5581 5.29e-09
11 8psn:A 417 16 0.2093 0.0216 0.5625 1.7 8pso:A, 8psq:A, 8pss:A, 8psu:A, 8psx:A, 8psz:A, 8pt2:A, 8pt6:A, 8pt7:A, 8pth:A, 8ptj:A, 8qz8:A
12 6fxc:Ab 226 39 0.3023 0.0575 0.3333 2.3 7bge:b, 8bh6:b, 8bh7:b, 8byv:b, 6fxc:Bb, 7kwg:b, 5li0:b, 5nd8:b, 5nd9:b, 5ngm:Ab, 7nhl:c, 7nhm:c, 8p2f:c, 8p2g:c, 8p2h:c, 7p48:b, 6s0x:b, 6s13:b, 8y38:b, 8y39:b, 6yef:b
13 8pvr:B 509 34 0.3256 0.0275 0.4118 2.6 8pvr:A
14 6uxv:I 109 33 0.3256 0.1284 0.4242 4.3 6uxw:I
15 7oz9:BBB 483 29 0.2791 0.0248 0.4138 4.4 7oz9:AAA
16 8e7f:A 614 20 0.2326 0.0163 0.5000 4.9
17 6o8w:C 275 22 0.1860 0.0291 0.3636 5.1 7nhk:G, 6o8x:C, 6o8y:C, 6o8z:C, 6o90:C, 7p7q:G, 7p7r:G, 7p7s:G, 7p7t:G, 7p7u:G, 6w6p:C
18 7qep:M3 161 23 0.2558 0.0683 0.4783 5.3
19 7mfm:G 1483 34 0.3023 0.0088 0.3824 5.6 7mfm:H, 7mft:G
20 2mkd:A 60 17 0.1395 0.1000 0.3529 6.1 2mkn:A
21 6d6j:B 113 34 0.3256 0.1239 0.4118 7.5 6d6j:A
22 5wnj:A 264 23 0.2558 0.0417 0.4783 8.1 5wni:A, 5wnk:A, 5wnl:A, 5wnm:A
23 7zr1:A 529 27 0.2558 0.0208 0.4074 9.3 4yke:A, 4yke:B, 7zr1:B
24 4rdv:B 451 38 0.2326 0.0222 0.2632 9.5 3mdu:A, 3mdw:A, 3mdw:B, 3mdw:C, 3mdw:D, 4rdv:A, 4rdv:C, 4rdv:D, 4rdw:A, 4rzb:A, 4rzb:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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