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BioLiP
>protein
GEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQK

The query sequence (length=54) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 3tzd:A 58 54 1.0000 0.9310 1.0000 5.24e-35 3dm1:A, 3dm1:C, 3dm1:G, 3dm1:E, 2l11:A
2 1guw:A 73 46 0.7037 0.5205 0.8261 6.09e-24 6d07:A, 6d07:B, 6d08:A, 6d08:B
3 2rvn:A 83 52 0.6667 0.4337 0.6923 2.07e-23
4 8uxq:A 170 50 0.6667 0.2118 0.7200 2.12e-21 3fdt:A
5 8uxq:A 170 44 0.2593 0.0824 0.3182 0.023 3fdt:A
6 6asz:A 53 52 0.5741 0.5849 0.5962 1.14e-19 6at0:A, 1kna:A, 1kne:A, 6mha:A, 1q3l:A
7 5epl:B 58 52 0.4444 0.4138 0.4615 2.61e-13 5epl:A
8 5epk:A 54 47 0.4074 0.4074 0.4681 1.91e-12 3h91:A, 3h91:B
9 4u68:A 64 49 0.4444 0.3750 0.4898 3.66e-12 4quf:A, 4quf:B, 4quf:C, 4quf:D, 4quf:E, 4quf:F, 4u68:B, 4u68:C
10 3gv6:A 56 52 0.4074 0.3929 0.4231 6.06e-12 3i90:A, 3i90:B
11 5eq0:A 55 47 0.4074 0.4000 0.4681 6.13e-12 3i91:A
12 5ejw:A 80 47 0.4259 0.2875 0.4894 7.75e-12 5epj:A, 2kvm:A, 2l12:A, 2l1b:A, 4mn3:A, 8sii:A, 8sii:B, 6v2r:A, 4x3k:A, 4x3k:B, 4x3s:B, 4x3s:A, 4x3t:A, 4x3t:B, 4x3t:C, 4x3t:D, 4x3t:E, 4x3t:F, 4x3u:A, 4x3u:B
13 3qo2:A 61 48 0.4630 0.4098 0.5208 4.89e-11 7m5u:A, 3qo2:D, 3qo2:B, 3qo2:C, 3r93:A, 3r93:D, 3r93:B, 3r93:C, 3svm:A, 6v2s:A, 6v2s:B
14 7n27:A 57 49 0.4074 0.3860 0.4490 5.69e-10 7n27:D, 7n27:B, 7n27:C, 7n27:E, 7n27:F
15 6v41:AAA 61 54 0.4074 0.3607 0.4074 8.36e-10
16 1pfb:A 55 52 0.4074 0.4000 0.4231 1.18e-09 1pdq:A
17 7vyw:A 47 42 0.3519 0.4043 0.4524 2.03e-09
18 6v2d:G 64 49 0.3889 0.3281 0.4286 5.76e-09 5jjz:A, 7slw:A, 7slw:B, 7slw:C, 7slw:D, 7slw:E, 7slw:F, 8sp6:A, 8sp6:B, 8sp6:C, 8sp6:D, 8sp6:E, 8sp6:F, 6v2d:I, 6v2d:K, 6v2d:A, 6v2d:C, 6v2d:E, 6v2h:A, 6v2h:C, 6v2h:E, 6v2h:G, 6v2h:I, 6v2h:K, 6v3n:A, 6v3n:B, 6v8w:A, 6v8w:B, 6v8w:C, 6v8w:D, 6v8w:E, 6v8w:F, 6v8w:G, 6v8w:H, 6v8w:I, 6v8w:J, 6v8w:K, 6v8w:L, 6v8w:M, 6v8w:N, 6v8w:O, 6v8w:P, 6v8w:Q, 6v8w:R, 6v8w:S, 6v8w:T, 6v8w:U, 6v8w:V, 6v8w:W, 6v8w:X, 6v8w:Y, 6v8w:Z
19 7vrf:A 61 50 0.3889 0.3443 0.4200 1.01e-08 7vrf:B
20 2rsn:A 75 39 0.3889 0.2800 0.5385 3.11e-07 3g7l:A
21 4fsx:A 680 58 0.4259 0.0338 0.3966 1.83e-04 4fsx:B, 4ft2:B, 4ft2:A
22 7ubu:A 708 58 0.4259 0.0325 0.3966 1.89e-04 4ft4:A, 4ft4:B
23 5e4w:C 105 42 0.3519 0.1810 0.4524 3.79e-04 5e4w:D, 5e4x:A
24 2b2w:A 177 25 0.2407 0.0734 0.5200 5.36e-04 5afw:A, 2b2t:A, 2b2u:A, 2b2v:A, 4nw2:A, 4nw2:C, 4o42:A
25 6hw2:B 69 44 0.2407 0.1884 0.2955 6.61e-04 8jzw:C, 8jzw:D, 8jzw:A, 8jzw:B, 5t1i:A, 5t1i:B
26 3q6s:B 67 44 0.2222 0.1791 0.2727 0.007 3q6s:A, 3q6s:C, 3q6s:D, 5t1g:A
27 6s47:Bi 952 40 0.2037 0.0116 0.2750 1.2
28 5lzw:jj 425 33 0.2222 0.0282 0.3636 1.3 5lzx:jj, 5lzy:jj, 5lzz:jj
29 4ov9:A 380 44 0.2593 0.0368 0.3182 1.8 4ov4:A
30 9gd1:W 849 39 0.2037 0.0130 0.2821 2.8
31 9gd1:W 849 57 0.2407 0.0153 0.2281 9.2
32 6ryr:W 708 36 0.1852 0.0141 0.2778 3.7 2l75:A, 1mm2:A, 6q3m:D, 6ryu:W, 6ryu:V
33 1ffq:A 540 33 0.2222 0.0222 0.3636 4.4 7fd6:A, 2wk2:A, 2wly:A, 2wlz:A, 2wm0:A, 1x6n:A
34 6rxj:A 235 39 0.2407 0.0553 0.3333 6.0 6rxj:B, 6rxk:A, 6rxl:A, 6rxm:A, 6rxm:B, 6rxm:C, 6rxm:D, 6rxm:E, 6rxm:F, 6rxo:A, 6rxo:B, 6rxp:A, 6rxp:B, 6rxq:A, 6rxq:B, 6rxq:C, 6rxq:D, 6rxr:A, 6rxr:B, 6rxr:C, 6rxr:D, 1s5p:A
35 6q3m:C 219 36 0.1852 0.0457 0.2778 7.9 6q3m:A, 6q3m:B
36 6ftx:W 878 57 0.2407 0.0148 0.2281 8.0 6g0l:W, 5j70:A, 5j70:B, 3mwy:W, 3ted:A
37 6g0l:M 855 57 0.2407 0.0152 0.2281 8.4 7nkx:W, 5o9g:W
38 6guu:B 204 28 0.2037 0.0539 0.3929 8.5 6guu:A
39 7tn2:W 895 57 0.2407 0.0145 0.2281 8.8 9gd2:W, 9gd3:W

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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