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BioLiP
>protein
GEFAQAVKEYAKAVKEYAFAVKEYAQAVKG

The query sequence (length=30) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7bo9:A 30 30 1.0000 1.0000 1.0000 3.15e-13 7bo9:D
2 6g6f:C 30 30 0.7333 0.7333 0.7333 2.45e-10 6g6f:A, 6g6f:B, 6g6f:F, 6g6f:G
3 6g6a:B 30 30 0.7000 0.7000 0.7000 6.70e-09 6g6b:A, 6g6c:H, 6g6c:I, 6g6c:P, 6g6c:Q, 6g6c:R, 6g6c:S, 6g6c:U, 6g6c:X
4 6g68:H 30 30 0.5667 0.5667 0.5667 9.73e-09 6g68:L, 6g68:M, 6g68:O, 6g69:I, 6g69:M
5 7bau:D 30 30 0.6000 0.6000 0.6000 2.76e-08 7bau:J, 7bau:E, 7bau:G, 7bau:I
6 4pnb:D 30 30 0.5667 0.5667 0.5667 3.02e-08
7 5ez8:E 30 30 0.7000 0.7000 0.7000 5.52e-08 5ez8:G, 5ez8:A, 7nfj:C, 7nfj:E, 4pna:B, 4pna:D, 4pna:A, 4pna:G
8 7bat:B 30 30 0.5667 0.5667 0.5667 1.75e-07 7baw:D, 7baw:F
9 7qwb:E 30 30 0.6000 0.6000 0.6000 5.79e-07 6zt1:D, 6zt1:F, 6zt1:A, 6zt1:H, 6zt1:J
10 7a1t:C 30 30 0.6000 0.6000 0.6000 5.79e-07 7a1t:E, 7bim:D, 7bim:F, 7bim:H, 7bim:M, 7bim:P, 7bim:R, 7bim:j, 7bim:U, 7bim:W, 7bim:a, 7bim:c, 7bim:B, 7bim:g, 7bim:i, 7qwd:B, 7qwd:E, 7qwe:B, 7qwe:C, 7qwe:F
11 8b16:A 30 30 0.5667 0.5667 0.5667 1.61e-06 8b16:L, 8b16:H, 8b16:J, 8b16:D, 7bas:B, 7bas:A
12 7qwa:C 30 30 0.4667 0.4667 0.4667 4.98e-06 7qwa:D
13 6eiz:A 30 30 0.5000 0.5000 0.5000 8.34e-06 6eiz:C, 6eiz:E, 4pn9:C, 4pn9:E
14 5ez9:F 30 30 0.5000 0.5000 0.5000 4.33e-05 5ez9:B, 5ezc:F, 5ezc:B, 7nfn:C, 7nfn:G, 7nfn:I, 7nfn:M
15 7r3a:A 411 18 0.3000 0.0219 0.5000 6.4 7r3a:B, 7r3a:C, 7r3a:D, 7r3a:E, 7r3a:F, 7r3a:G, 7r3a:H
16 7p8n:B 613 24 0.3667 0.0179 0.4583 6.6 7p5h:B, 7p5h:E, 7p5h:b, 7p5h:e, 7p8n:b, 7p91:b, 7p91:B, 7p92:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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