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BioLiP
>protein
GEATKRVEDQFKAKVNQTLSSTDPPVWHGRRK

The query sequence (length=32) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 8glv:Ny 32 32 1.0000 1.0000 1.0000 1.27e-18
2 6wkd:A 280 28 0.3750 0.0429 0.4286 0.11 6wkf:A, 6wkh:A
3 6wkj:A 251 28 0.3750 0.0478 0.4286 0.15
4 7o56:A 114 20 0.2500 0.0702 0.4000 5.7 8jkl:C, 8jkl:D, 8jkl:G, 8jkl:H, 8jkn:C, 8jkn:D, 8jkn:G, 8jkn:H, 8jko:C, 8jko:D, 8jko:G, 8jko:H, 8jkq:D, 8jkq:G, 8jkq:F, 8jkq:H, 8jks:C, 8jks:D, 8jks:G, 8jks:H, 7jm4:B, 7jm4:A, 7jm4:G, 7jm4:H, 7o56:B, 7o56:C, 7ogs:A, 7ogs:B, 7ogs:E, 7ogs:F, 7oot:A, 7oot:B, 7rh2:G, 7rh2:H, 7rh2:A, 7rh2:B
5 6ro8:A 413 27 0.2812 0.0218 0.3333 6.1

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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