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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GDYVYFENSSSNPYLIRRIEELNKTANGNVEAKVVCFYRRRDISHQLRHRELFLSRQLESLPATHIRGKCSVTLLNETES
LKSYLEREDFFFYSLVYDPQQKTLADGEIRVGNRYQADITDLLKEGEEDGRDQSRLETQVWEAHNPLTDKQIDQFLVVAR
SVGTFARALDSLHMSAAAASRDITLFHAMDTLHKNIYDISKAISALVPQGGPVLCRDEMEEWSASEANLFEEALEKYGKD
FTDIQQDFLPWKSLTSIIEYYYMWKTTDRYVQQKRQAFYLHTTKLTRIARRLCREILRPWHAARHPYLPINSAAIKAECT
ARLPEAVRKPLEAVLRYLETHPR

The query sequence (length=343) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7aoa:D 343 343 1.0000 1.0000 1.0000 0.0 7ao8:D, 7ao8:A, 7ao9:D, 7ao9:A, 7aoa:A, 5icn:A
2 5znp:B 186 97 0.0845 0.1559 0.2990 0.099 5znp:A, 5znr:A, 5znr:B
3 4a69:C 69 50 0.0496 0.2464 0.3400 0.26 4a69:D
4 5z8l:A 204 96 0.0787 0.1324 0.2812 1.2 5z8n:A, 5z8n:B, 5z8n:C
5 6c6g:A 457 55 0.0466 0.0350 0.2909 3.9 6c6g:B
6 7cce:A 159 105 0.0758 0.1635 0.2476 4.8
7 1hqf:A 314 35 0.0350 0.0382 0.3429 5.7 1d3v:A, 1d3v:B, 3e8q:A, 3e8q:B, 3e8q:C, 3e8z:A, 3e8z:B, 3e8z:C, 3e9b:A, 3e9b:B, 3e9b:C, 1hq5:A, 1hq5:B, 1hqf:B, 1hqf:C, 1hqg:A, 1hqg:B, 1hqg:C, 1hqh:A, 1hqh:B, 1hqh:C, 1hqx:A, 1hqx:B, 1hqx:C, 1p8m:A, 1p8m:B, 1p8m:C, 1p8n:A, 1p8n:B, 1p8n:C, 1p8o:A, 1p8o:B, 1p8o:C, 1p8p:A, 1p8p:B, 1p8p:C, 1p8q:A, 1p8q:B, 1p8q:C, 1p8r:A, 1p8r:B, 1p8s:A, 1p8s:B, 1p8s:C, 1r1o:A, 1r1o:B, 1r1o:C, 1rla:A, 1rla:B, 1rla:C, 2rla:A, 2rla:B, 2rla:C, 3rla:A, 3rla:B, 3rla:C, 4rla:A, 4rla:B, 4rla:C, 5rla:A, 5rla:B, 5rla:C, 1t4p:A, 1t4p:B, 1t4p:C, 1t4r:A, 1t4r:B, 1t4r:C, 1t4s:A, 1t4s:B, 1t4s:C, 1t4t:A, 1t4t:B, 1t4t:C, 1t5f:A, 1t5f:B, 1t5f:C, 1t5g:A, 1t5g:B, 1t5g:C, 1ta1:A, 1ta1:B, 1ta1:C, 1tbh:A, 1tbh:B, 1tbh:C, 1tbj:A, 1tbj:B, 1tbj:C, 1tbl:A, 1tbl:B, 1tbl:C, 1zpe:A, 1zpe:B, 1zpe:C, 1zpg:A, 1zpg:B, 1zpg:C
8 8xx9:A 620 80 0.0554 0.0306 0.2375 6.1 8xxa:A
9 1ofc:X 266 122 0.0845 0.1090 0.2377 6.2
10 2vpw:A 734 77 0.0612 0.0286 0.2727 6.7 2vpw:E, 2vpx:A, 2vpx:E, 2vpy:A, 2vpy:E, 2vpz:A, 2vpz:E
11 8w7m:5 529 149 0.0904 0.0586 0.2081 7.0
12 3k1j:A 566 94 0.0787 0.0477 0.2872 7.7 3k1j:B
13 7xyz:B 456 50 0.0554 0.0417 0.3800 9.8 7xv2:A, 7xyy:A, 7xyy:B, 7xyz:A, 7xyz:C, 7xyz:D, 7xz0:A, 7xz0:B, 7xz1:A, 7xz1:B, 7xz2:A, 7xz2:B, 7xz2:C, 7xz2:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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