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BioLiP
>protein
GDIKSVLLTAEQIQARIAELGEQIGNDYREQDLLLITVLKGAVLFVTDLARAIPVPTQFEFMAVSSYVVRILKDLDRDIH
GRDVLIVEDVVDSGLTLSWLSRNLTSRNPRSLRVCTLLRKPDAVHANVEIAYVGFDIPNDFVVGYGLDYDERYRDLSYIG
TLDPRV

The query sequence (length=166) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 5kny:B 187 180 1.0000 0.8877 0.9222 1.55e-113 5knp:A, 5knp:B, 5knp:C, 5knp:D, 5knq:A, 5knq:B, 5knq:C, 5knq:D, 5kny:A, 5kny:C, 5kny:D, 4rht:A, 4rht:B, 4rht:C, 4rht:D, 4rhu:A, 4rhu:B, 4rhu:C, 4rhu:D, 4rhu:E, 4rhu:F, 4rhx:A, 4rhx:B, 4rhx:C, 4rhx:D, 4rhy:A, 4rhy:B, 4rhy:C, 4rhy:D
2 4pfq:C 184 169 0.5663 0.5109 0.5562 3.64e-61 4pfq:A, 4pfq:B, 4pfq:D, 4pfq:E, 4pfq:F, 4pfq:G, 4pfq:H
3 2geb:A 184 173 0.5482 0.4946 0.5260 1.50e-60 1r3u:A, 1r3u:B, 1yfz:A, 1yfz:B
4 3kb8:A 201 173 0.5060 0.4179 0.4855 2.27e-51 6d9r:A, 6d9r:B, 6d9s:A, 6d9s:B, 3h83:A, 3h83:B, 3kb8:B
5 5knx:B 176 167 0.4880 0.4602 0.4850 2.83e-51 1g9s:A, 1g9s:B, 1g9t:A, 1g9t:B, 1grv:B, 1grv:A, 1j7j:A, 1j7j:B, 5knr:A, 5knr:B, 5kns:A, 5kns:B, 5knt:A, 5knt:B, 5knu:A, 5knu:B, 5knv:A, 5knv:B, 5knx:A
6 3acc:A 166 159 0.4639 0.4639 0.4843 1.32e-45 3acd:A
7 4qyi:B 171 169 0.4096 0.3977 0.4024 4.71e-45 4qyi:A, 4qyi:C, 4qyi:D, 4qyi:E
8 1p17:B 204 175 0.4518 0.3676 0.4286 9.47e-38 1i0i:A, 1i0i:B, 1i0l:A, 1i0l:B, 1i13:A, 1i13:B, 1i14:A, 1i14:B, 1p17:A, 1p17:C, 1p17:D, 1p18:A, 1p18:B, 1p19:A, 1p19:B, 1p19:C, 1p19:D, 1tc1:A, 1tc1:B, 1tc2:A, 1tc2:B
9 6igs:B 167 157 0.3614 0.3593 0.3822 3.11e-37 6igs:A, 6igs:C, 6igs:D
10 1hgx:A 164 162 0.4036 0.4085 0.4136 3.43e-36
11 7cmj:A 184 173 0.4157 0.3750 0.3988 3.13e-34 1pzm:A, 1pzm:B
12 6aps:A 185 172 0.3494 0.3135 0.3372 3.21e-26 6aps:B, 6apt:A, 6apt:B, 6apu:A, 6apu:B, 6apv:A, 6apv:B, 6apv:C, 6apv:D, 5jsq:A, 5jsq:B, 5jv5:A, 5jv5:B, 5k51:A, 5k51:B, 5k51:C, 5k51:D, 5kam:A, 5kam:C, 5kap:A, 5kap:B, 6mxg:A, 6mxg:B, 7sb7:A, 7sb7:B, 8tr1:A, 8tr1:B, 8tr1:C, 8tr1:D, 8ts4:A, 8ts4:B
13 2jbh:B 213 180 0.3675 0.2864 0.3389 2.68e-22 2jbh:A
14 8fx3:B 223 191 0.3434 0.2556 0.2984 7.49e-22 8fwy:A, 8fwy:B, 8fwz:A, 8fwz:B, 8fx0:A, 8fx0:B, 8fx1:A, 8fx1:B, 8fx2:A, 8fx2:B, 8fx3:A
15 6mxc:C 220 187 0.3253 0.2455 0.2888 1.39e-21 6aqo:A, 6aqo:B, 6aqo:C, 6aqo:D, 6aqo:E, 6aqo:F, 6ar9:A, 6ar9:B, 6ar9:C, 6ar9:D, 6ar9:E, 6ar9:F, 6mxb:A, 6mxb:B, 6mxb:C, 6mxb:D, 6mxb:E, 6mxb:F, 6mxc:A, 6mxc:B, 6mxc:D, 6mxc:E, 6mxc:F, 6mxd:A, 6mxd:B, 6mxd:C, 6mxd:D, 7scr:A, 7scr:C, 7scr:B, 7scr:D, 7scr:E, 7scr:F
16 5ipf:A 201 170 0.3434 0.2836 0.3353 3.36e-21 5ipf:B, 5ipf:C, 5ipf:D
17 1bzy:A 214 175 0.3133 0.2430 0.2971 5.54e-20 6bnj:A, 6bnj:B, 6bnj:C, 6bnj:D, 5brn:A, 5brn:C, 5brn:D, 1bzy:B, 1bzy:C, 1bzy:D, 1d6n:A, 1d6n:B, 3gep:A, 3gep:B, 3ggc:A, 3ggc:B, 3ggj:A, 3ggj:B, 5hia:A, 5hia:B, 5hia:C, 5hia:D, 1hmp:A, 1hmp:B, 4ijq:A, 4ijq:B, 4ijq:C, 4ijq:D, 4rab:A, 4rab:B, 4rab:C, 4rab:D, 4rac:A, 4rac:B, 4rac:C, 4rac:D, 4rad:A, 4rad:B, 4rad:C, 4rad:D, 4rad:E, 4rad:F, 4rad:G, 4rad:H, 4ran:A, 4ran:B, 4ran:C, 4ran:D, 4rao:A, 4rao:B, 4rao:C, 4rao:D, 4raq:A, 4raq:B, 4raq:C, 4raq:D, 7san:A, 7san:B, 7san:C, 7san:D, 8tpv:A, 8tpv:B, 8tpv:C, 8tpv:D, 5w8v:A, 5w8v:B, 5w8v:C, 5w8v:D
18 5brn:B 194 161 0.3133 0.2680 0.3230 1.76e-19 5bsk:A, 5bsk:B, 5bsk:C, 5bsk:D, 4kn6:A, 8tpy:A, 8tpy:B, 8tpy:C, 8tpy:D
19 2vfa:B 205 165 0.3133 0.2537 0.3152 4.69e-19 2vfa:A
20 6bo7:A 220 166 0.2952 0.2227 0.2952 3.92e-17 6bo7:B, 6bo7:C, 6bo7:D, 6bo7:E, 6bo7:F, 6bo7:G, 6bo7:H, 6bo7:I, 6bo7:J, 6bo7:K, 6bo7:L
21 1fsg:A 233 182 0.3313 0.2361 0.3022 1.70e-16 1dbr:A, 1dbr:B, 1dbr:D, 1fsg:C, 1qk3:A, 1qk3:B, 1qk3:C, 1qk3:D, 1qk4:A, 1qk4:B, 1qk4:C, 1qk4:D, 1qk5:A, 1qk5:B
22 3ozf:B 234 176 0.2952 0.2094 0.2784 1.13e-15 1cjb:A, 1cjb:B, 1cjb:C, 1cjb:D, 3ozf:A, 3ozf:C, 3ozf:D, 3ozg:A, 3ozg:B, 3ozg:C, 3ozg:D, 7tux:A, 7tux:B, 7tux:C, 7tux:D
23 5esw:A 190 172 0.2048 0.1789 0.1977 6.59e-09 5esx:A, 5esx:B
24 1dqn:A 230 159 0.2410 0.1739 0.2516 3.76e-07 1dqn:B, 1dqp:A, 1dqp:B
25 4zfn:B 177 43 0.1024 0.0960 0.3953 0.007 5bqp:A, 5bqp:B, 5bqp:C, 5bqp:D, 4z1o:A, 4z1o:B, 4zfn:A
26 6asv:C 311 33 0.0723 0.0386 0.3636 0.69 6asv:A, 6asv:B, 4s2u:A, 7xmu:A, 7xmu:F, 7xmu:C, 7xmu:D, 7xmu:B, 7xmu:E, 7xmv:A, 7xmv:F, 7xmv:C, 7xmv:E, 7xmv:B, 7xmv:D, 7xn3:A, 7xn3:E, 7xn3:C, 7xn3:B, 7xn3:D, 7xn3:F
27 7oe3:L 1478 92 0.1506 0.0169 0.2717 1.6 7oea:L, 7oeb:L
28 7rtm:A 571 43 0.1084 0.0315 0.4186 1.7 7rtm:B
29 7ojl:L 1498 92 0.1506 0.0167 0.2717 1.7
30 7ojn:L 2010 92 0.1506 0.0124 0.2717 1.7 5j1n:A, 5j1p:A, 4miw:A, 7oe7:L
31 7ojj:L 1785 92 0.1506 0.0140 0.2717 1.7
32 7ojk:L 1843 92 0.1506 0.0136 0.2717 1.9
33 4twb:A 278 58 0.0964 0.0576 0.2759 4.4 4twb:B, 4twb:C, 4twb:D, 4twb:E, 4twb:F
34 7kl6:A 147 45 0.0783 0.0884 0.2889 4.5
35 3cp5:A 116 28 0.0843 0.1207 0.5000 9.4 6cuk:A, 6cun:A
36 5hgr:A 315 117 0.1807 0.0952 0.2564 9.6 5hgr:B
37 4itu:A 253 45 0.0663 0.0435 0.2444 10.0 4gh5:A, 4gh5:B, 4gh5:C, 4gh5:D, 4itu:B, 4itu:C, 4itu:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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