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BioLiP
>protein
GATESGKRMDCPALPPGWKKEEVIKKSGLSAGKSDVYYFSPSGKKFRSKPQLARYLGNTVDLSSFDFRTGKMMP

The query sequence (length=74) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 7mwm:A 74 74 1.0000 1.0000 1.0000 1.98e-50 6c1a:A, 6c1a:B, 6c1a:E, 6c1a:F, 6c1t:A, 6c1t:D, 6c1u:A, 6c1u:B, 6c1u:E, 6c1u:F, 6c1v:A, 6c1v:B, 6c1v:E, 6c1v:F, 6c2f:A, 6c2f:D, 6c2f:G, 6c2f:J, 6c2f:M, 6c2f:P, 6cnp:A, 6cnp:B, 6cnq:A, 6cnq:B, 7mwk:A, 7mwk:B, 7mwm:B, 7ray:A
2 2ky8:A 70 66 0.8378 0.8857 0.9394 7.34e-42
3 6ccg:A 72 67 0.6757 0.6944 0.7463 2.78e-34 6cc8:A, 6cc8:B, 6ccg:B, 6ceu:A, 6ceu:B, 6cev:A, 6cev:B
4 1ig4:A 75 64 0.4865 0.4800 0.5625 6.17e-23 6d1t:A
5 6ogj:B 82 76 0.4730 0.4268 0.4605 2.58e-12 5bt2:A, 6c1y:A, 6c1y:B, 3c2i:A, 6ogj:A, 6ogk:A, 6yww:A
6 7fef:A 48 44 0.2973 0.4583 0.5000 4.29e-10
7 2moe:A 71 73 0.4324 0.4507 0.4384 1.06e-08 4lg7:A
8 3vxv:A 65 43 0.3108 0.3538 0.5349 1.87e-08 3vxx:A, 3vyb:A, 3vyq:A, 3vyq:D
9 7fhj:B 107 47 0.2162 0.1495 0.3404 5.49e-04 7mwh:B, 7mwl:B
10 7s7b:F 352 35 0.2162 0.0455 0.4571 0.38 7s7b:B, 7s7c:B
11 2lvh:A 45 24 0.1622 0.2667 0.5000 1.3
12 5ktc:A 187 29 0.1486 0.0588 0.3793 1.9 5ktd:A
13 4v61:BN 176 47 0.2162 0.0909 0.3404 4.0
14 4coy:A 232 41 0.1757 0.0560 0.3171 6.1 4cou:A, 4cov:A, 4cow:A, 4coz:A
15 7z3n:C 444 45 0.1892 0.0315 0.3111 7.3 7z3o:C
16 7a4p:4 207 28 0.1081 0.0386 0.2857 7.5 6zzx:4, 6zzy:4
17 5a0y:F 248 24 0.1351 0.0403 0.4167 7.9 5a0y:C, 5a8k:C, 5a8k:F, 7b2h:C, 7b2h:F, 5g0r:F, 5g0r:C, 1hbm:C, 1hbm:F, 1hbn:C, 1hbn:F, 1hbo:C, 1hbo:F, 1hbu:C, 1hbu:F, 3m1v:F, 3m1v:C, 3m2r:F, 3m2r:C, 3m2u:F, 3m2u:C, 3m2v:F, 3m2v:C, 3m30:F, 3m30:C, 3m32:F, 3m32:C, 1mro:F, 1mro:C, 3pot:F, 3pot:C, 7suc:c, 7suc:C, 7sxm:F, 7sxm:C
18 5b4t:A 260 22 0.1081 0.0308 0.3636 7.9 5b4u:A, 5b4v:A, 3vdq:A, 3vdq:B, 3vdq:C, 3vdq:D, 3vdr:A, 3vdr:B, 3vdr:C, 3vdr:D, 3w8d:A, 3w8e:A, 3w8f:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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