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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRL
LPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTP
EQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG
KQALETVQRLLPVLCQAHGLTPQQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP
VLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQ
VVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGGRP
ALDAVKKL

The query sequence (length=488) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4gjp:A 497 488 0.9939 0.9759 0.9939 0.0 4gg4:A, 4gjp:B, 4gjr:A, 6jtq:A, 6jtq:B, 6jvz:A, 6jvz:B, 6jw0:A, 6jw0:B, 6jw1:A, 6jw1:B, 6jw2:A, 6jw2:B, 6jw2:E, 6jw2:H, 6jw3:A, 6jw3:B, 6jw3:E, 6jw3:H, 6jw4:A, 6jw4:B, 6jw4:E, 6jw4:H, 6jw5:A, 6jw5:B, 6jw5:E, 6jw5:H, 6lew:A, 4osh:B, 4osh:A, 4osi:A, 4osj:A, 4osj:B, 4osk:A, 4osk:B, 4osl:A, 4osl:B, 4osm:A, 4osm:B, 4osq:A, 4osr:A, 4oss:A, 4ost:B, 4ost:A, 4osv:A, 4osw:A, 4osz:B, 4osz:A, 4ot0:A, 4ot0:B, 4ot3:B, 4ot3:A, 4oto:A, 3v6t:A
2 2ypf:A 675 492 0.8996 0.6504 0.8923 0.0 4gjr:B, 6lew:B, 4osi:B, 4osq:B, 4osr:B, 4oss:B, 4osv:B, 4osw:B, 4oto:B, 3v6t:B
3 2ypf:A 675 496 0.8299 0.6000 0.8165 0.0 4gjr:B, 6lew:B, 4osi:B, 4osq:B, 4osr:B, 4oss:B, 4osv:B, 4osw:B, 4oto:B, 3v6t:B
4 2ypf:A 675 428 0.7561 0.5467 0.8621 0.0 4gjr:B, 6lew:B, 4osi:B, 4osq:B, 4osr:B, 4oss:B, 4osv:B, 4osw:B, 4oto:B, 3v6t:B
5 2ypf:A 675 486 0.7459 0.5393 0.7490 0.0 4gjr:B, 6lew:B, 4osi:B, 4osq:B, 4osr:B, 4oss:B, 4osv:B, 4osw:B, 4oto:B, 3v6t:B
6 2ypf:A 675 411 0.5676 0.4104 0.6740 1.12e-151 4gjr:B, 6lew:B, 4osi:B, 4osq:B, 4osr:B, 4oss:B, 4osv:B, 4osw:B, 4oto:B, 3v6t:B
7 3ugm:A 854 492 0.8689 0.4965 0.8618 0.0
8 3ugm:A 854 498 0.7992 0.4567 0.7831 0.0
9 3ugm:A 854 499 0.7889 0.4508 0.7715 0.0
10 3ugm:A 854 417 0.6803 0.3888 0.7962 0.0
11 3ugm:A 854 372 0.5615 0.3208 0.7366 2.02e-152
12 4cja:A 753 455 0.3443 0.2231 0.3692 2.59e-57
13 4cja:A 753 412 0.3094 0.2005 0.3665 4.37e-56
14 4cja:A 753 446 0.3279 0.2125 0.3587 1.88e-52
15 4cja:A 753 456 0.3402 0.2205 0.3640 3.91e-52
16 4cja:A 753 261 0.1803 0.1169 0.3372 6.77e-24
17 7tve:D 445 143 0.0635 0.0697 0.2168 0.52
18 8qpl:A 331 183 0.0881 0.1299 0.2350 5.3 8qpl:B
19 7w0k:A 457 79 0.0369 0.0394 0.2278 7.8 7w0z:A, 7w10:A, 7w1b:A, 7w1h:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218