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BioLiP
>protein
GAQVSSQKVGAHVNYTTINYYKDSASNAASKLDFSQDPSKFTEPVKDIMIKTAPALN

The query sequence (length=57) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 7oj7:444 57 57 1.0000 1.0000 1.0000 4.28e-37 4q4w:4, 4q4x:4, 4q4y:4, 7qb5:444, 6tsd:444
2 3epd:4 62 62 0.8947 0.8226 0.8226 1.01e-31 1al2:4, 1ar6:4, 1ar7:4, 1ar8:4, 1ar9:4, 1asj:4, 1piv:4, 1po1:4, 1po2:4, 1pvc:4, 1vba:4, 1vbb:4, 1vbc:4, 1vbd:4, 1vbe:4
3 5kzw:A 850 39 0.2105 0.0141 0.3077 2.5 8cb1:A, 8cb6:A, 5kzx:A, 5nn4:A, 5nn5:A, 5nn6:A, 5nn8:A, 7p2z:AaA, 7p32:AAA
4 7u5h:A 422 39 0.2105 0.0284 0.3077 3.1 7u5h:B, 7u5h:C, 7u5h:D, 7u5h:E, 7u5h:F, 7u5h:G, 7u5h:H, 7u5h:I, 7u5h:J, 7u5h:K, 7u5h:L, 3var:A
5 8fbm:A 426 34 0.2105 0.0282 0.3529 5.1 8fbm:B, 8fbt:B, 8fbt:A, 8fbu:A, 8fbu:B
6 8bx8:C 3947 48 0.3158 0.0046 0.3750 6.6 7k58:C, 7k5b:C, 7kek:C
7 4m9s:B 511 33 0.2105 0.0235 0.3636 9.2 2a5y:B, 2a5y:C, 8jns:A, 8jns:B, 8jns:C, 8jns:D, 8jns:E, 8jns:F, 8jo0:A, 8jo0:B, 8jo0:C, 8jo0:D, 8jo0:E, 8jo0:F, 8jo0:G, 8jol:A, 8jol:B, 3lqq:A, 3lqq:B, 3lqr:A, 3lqr:B, 4m9s:A, 4m9s:C, 4m9s:D, 4m9x:A, 4m9x:B, 4m9y:A, 4m9y:B, 4m9z:A, 4m9z:B, 4m9z:C, 4m9z:D
8 6i5x:B 261 36 0.1754 0.0383 0.2778 9.6 6i5x:A, 6i5x:C, 6i5x:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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