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BioLiP
>protein
GAMGNKEKADQQKAVTDIVALENALDMYKLDNSVYPTTDQGLEALVTKPTNPEPRNYREGGYIKRLPKDPWGNDYQYLSP
GDKGTIDVFTLGADGQEGGEGTGADIGNWNIQDFQ

The query sequence (length=115) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4lw9:A 119 112 0.9739 0.9412 1.0000 4.77e-80 3fu1:A, 3fu1:B, 3gn9:A, 3gn9:B, 3gn9:C, 4lw9:B, 4lw9:C, 4lw9:D, 4lw9:E, 4lw9:F, 4lw9:I, 4lw9:J, 4lw9:K, 4lw9:L, 4lw9:Q, 4lw9:R
2 5o2y:A 116 110 0.6348 0.6293 0.6636 8.74e-48
3 5wda:A 130 94 0.5826 0.5154 0.7128 1.14e-45 5wda:B, 5wda:C, 5wda:D, 5wda:E, 5wda:F, 5wda:G, 5wda:H, 5wda:I, 5wda:J, 5wda:K, 5wda:L, 5wda:M, 5wda:N, 5wda:O, 5wda:P, 5wda:Q, 5wda:R, 5wda:S, 5wda:T, 5wda:U, 5wda:V, 5wda:W, 5wda:X, 5wda:Y
4 3g20:B 119 114 0.6087 0.5882 0.6140 3.71e-45 3g20:A
5 7q2x:D 994 26 0.0957 0.0111 0.4231 2.0 7q2y:D
6 7qen:D 1050 26 0.0957 0.0105 0.4231 2.0
7 2wag:A 217 48 0.1217 0.0645 0.2917 3.4
8 5kzt:B 510 33 0.1043 0.0235 0.3636 3.8 5kzt:A
9 8ijg:C 250 31 0.1217 0.0560 0.4516 6.1 8ij6:A, 8ij6:B, 8ij6:C, 8ij6:D, 8ijg:A, 8ijg:B, 8ijg:D
10 4oko:A 290 47 0.1478 0.0586 0.3617 9.8 4oko:B, 4oko:C, 4oko:D

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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