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BioLiP
>protein
GAMFQDPQERPRKLPQLCTELQTTIHDIILECVYCKQQLLRREVYDFARRDLCIVYRDGNPYAVCDKCLKFYSKISEYRH
YS

The query sequence (length=82) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 4xr8:H 151 80 0.9634 0.5232 0.9875 6.05e-54 2ljx:A, 2ljy:A, 2ljy:B, 2ljz:A
2 7uaj:B 512 73 0.8659 0.1387 0.9726 1.29e-47 2fk4:A, 8gcr:A, 4giz:C, 4giz:D, 8jrn:D, 8jrn:B, 8jro:D, 8jro:B, 8jrp:B, 8jrp:D, 8jrq:B, 8jrq:D, 8jrr:B, 8jrr:D, 8r1f:B, 8r1g:B, 8r1g:E, 6siv:B, 6sja:B, 7uaj:A, 7uaj:C, 7uaj:D, 4xr8:F
3 6sjv:A 529 79 0.5732 0.0888 0.5949 1.32e-30 6sqc:A
4 6slm:A 539 79 0.5488 0.0835 0.5696 1.79e-27
5 6smv:A 525 72 0.2439 0.0381 0.2778 2.16e-06
6 3py7:A 500 41 0.1463 0.0240 0.2927 0.010
7 4hg6:A 747 17 0.1341 0.0147 0.6471 2.6 5eiy:A, 5ej1:A, 5ejz:A, 4p00:A, 4p02:A
8 6yxx:AR 267 20 0.1220 0.0375 0.5000 3.0 7aoi:AR, 6hiv:AR, 6hix:AR, 6yxy:AR
9 8d3p:E 100 58 0.1951 0.1600 0.2759 5.2 8d3l:F, 8d3l:E, 8d3m:F, 8d3m:E, 8d3p:F, 8d3q:F, 8d3q:E
10 4rh7:A 3005 36 0.1098 0.0030 0.2500 5.7
11 6sc2:B 3930 36 0.1098 0.0023 0.2500 6.5 6rla:A, 6rla:B, 6sc2:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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