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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GAMEPSAPKELKFGDITKDSVHLTWEPPDDDGGSPLTGYVVEKREVSRKTWTKVMDFVTDLEFTVPDLVQGKEYLFKVCA
RNKCGPGEPAYVDEPVNMS

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 8bw6:A 99 99 1.0000 1.0000 1.0000 1.53e-70
2 8oq9:A 103 85 0.3333 0.3204 0.3882 6.68e-16 8oq9:B, 8oq9:C, 8orl:A, 8orl:B, 8orl:C
3 6iaa:A 815 93 0.3131 0.0380 0.3333 5.01e-08 6iaa:B
4 6x38:A 93 86 0.2323 0.2473 0.2674 9.81e-05
5 6gvk:A 201 86 0.3030 0.1493 0.3488 1.10e-04 6gvl:A
6 4bqc:A 197 74 0.2020 0.1015 0.2703 0.037
7 5ien:A 129 73 0.1919 0.1473 0.2603 0.26 5ien:B, 5ieo:A, 5iep:A
8 5ks7:A 123 29 0.1212 0.0976 0.4138 1.1 5ks7:B
9 6zpo:b 209 52 0.1515 0.0718 0.2885 4.9 2wss:T, 6z1u:b, 6zbb:b, 6zmr:b, 6zqm:b, 6zqn:b
10 4urm:B 195 36 0.1414 0.0718 0.3889 5.2 5cph:A, 5cph:B, 5ctu:A, 5ctu:B, 5ctw:A, 5ctw:B, 5ctx:B, 5cty:B, 5d6p:A, 5d6p:B, 5d6q:B, 5d7c:A, 5d7c:B, 5d7d:A, 5d7d:B, 5d7r:A, 5d7r:B, 3g75:A, 3g75:B, 3g7b:A, 3g7b:B, 4p8o:A, 4p8o:B, 6tck:A, 6tck:B, 3ttz:A, 3ttz:B, 6ttg:A, 6ttg:B, 3u2d:A, 3u2d:B, 3u2k:A, 3u2k:B, 4urm:A, 4urm:C, 4urm:D, 4uro:A, 4uro:B, 4uro:C, 4uro:D, 5z9p:A, 5z9p:B
11 2iou:A 376 27 0.1010 0.0266 0.3704 6.3 2iou:B, 2iou:C, 2iou:D, 2iou:E, 2iou:F, 1yu0:A, 1yu4:A, 1yu4:B, 1yu4:C

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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