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BioLiP
>protein
GAMALIEVEKPLYGVEVFVGETAHFEIELSEPDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAA
QTKSAANLKVKEL

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 1waa:C 93 93 0.9892 0.9892 0.9892 3.48e-64 1waa:A, 1waa:B, 1waa:D, 1waa:E, 1waa:F
2 5jdj:B 91 90 0.3011 0.3077 0.3111 9.37e-08 5jdj:E, 5jdj:I, 5jdj:L, 4qeg:A
3 8rih:B 333 46 0.1828 0.0511 0.3696 0.54 8rih:A
4 4zgf:A 141 72 0.2043 0.1348 0.2639 2.7
5 5koi:A 271 41 0.1183 0.0406 0.2683 2.9 5koi:B, 5koi:C, 5koi:D, 5koi:E, 5koi:F, 5koi:G, 5koi:H
6 1i1a:C 205 13 0.0753 0.0341 0.5385 4.4 1i1c:A
7 6bbx:A 121 21 0.0968 0.0744 0.4286 6.7 6bbx:B, 5ujp:A, 5ujp:B, 5umx:A, 5umx:B, 5umy:A, 5umy:B, 5w27:A, 5w27:B
8 9b4h:A 1908 44 0.1290 0.0063 0.2727 6.9 9b4h:B, 8wa2:A, 8wa2:D, 8wa2:F, 8wa2:B, 8wa2:C, 8wa2:E
9 5xbx:A 179 23 0.0860 0.0447 0.3478 8.9 5xc4:A, 5xc8:A, 5xc9:A, 5xca:A
10 3lst:A 333 41 0.1720 0.0480 0.3902 8.9 3lst:B

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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