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BioLiP
>protein
GALKPAKAIVEALLFAAGDEGLSLSQIAAVLEVSELEAKAVIEELQQDCRREERGIQLVELGGVFLLATKKEHAPYLKKL
V

The query sequence (length=81) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3w6k:C 87 80 0.9877 0.9195 1.0000 1.01e-50 3w6k:B, 3w6k:E, 3w6k:F
2 8jzg:B 390 47 0.2840 0.0590 0.4894 0.051 8jzg:A, 8jzg:D, 8jzg:C
3 1khw:B 497 40 0.1975 0.0322 0.4000 0.27 1khw:A
4 5a7i:A 313 71 0.2716 0.0703 0.3099 0.55 5a7j:A, 5a7j:B, 4cml:A, 3mtc:A, 3n9v:A, 3n9v:B
5 6wbo:A 555 20 0.1358 0.0198 0.5500 6.7
6 5knx:B 176 82 0.2593 0.1193 0.2561 7.6 1g9s:A, 1g9s:B, 1g9t:A, 1g9t:B, 1grv:B, 1grv:A, 1j7j:A, 1j7j:B, 5knr:A, 5knr:B, 5kns:A, 5kns:B, 5knt:A, 5knt:B, 5knu:A, 5knu:B, 5knv:A, 5knv:B, 5knx:A

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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