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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
GAIARVGFGYQDAFVLRSLPLWLSQSAFSHIVSEALSDIEVCYFSSEKSLHVMYEAKNHSLTATEFWDEIRRFKSLFDTH
PKNFIWFNLVCPSYNTAISPLISKIDRLRSVSVNGRSEYLDWCVGKKIDFSLAEFALDYVGFITFNSENSESIFLSEIQD
TINIELLRSQVKQLKDQFKNLISRSSFGPIYRKDFENFICHALEEDRSQWLLDPIKINLSASSSQYQDLNLDISDFNGPD
RAQKTSSDWNSLIKKAVSIGDFIHNSGDRRTLLIDGKQRMSTACMLGYVFSATRNFLLEIEHNGLIYRTDDHKQKEGQFF
TKIEAVEPQGETEAIVAIGFPTAIGKDIDSTINEVKSLPRLNLESSHAIDNMETLNLAVREAKSALVSFKSENKLSKLHL
FIKAPSVFAMVLGHRLNGICDIQLYDWVDGQYIPTAELNL

The query sequence (length=440) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 6vm6:B 440 440 1.0000 1.0000 1.0000 0.0 6vm6:A, 6vm6:C, 6vm6:D, 6vm6:E, 6wan:A, 6wan:B, 6wan:C, 6wan:D, 6wan:E
2 6wan:F 415 438 0.9432 1.0000 0.9475 0.0
3 1qp8:A 301 79 0.0500 0.0731 0.2785 1.0 1qp8:B
4 5y95:A 80 44 0.0364 0.2000 0.3636 1.3
5 8rf0:A 2780 35 0.0318 0.0050 0.4000 3.4 8rfe:A, 8rfg:A
6 1m1j:B 402 110 0.0705 0.0771 0.2818 4.6 1m1j:E
7 8hub:B 545 66 0.0386 0.0312 0.2576 5.7
8 1zun:B 394 47 0.0364 0.0406 0.3404 5.9
9 8hu6:B 629 66 0.0386 0.0270 0.2576 6.0 8hu6:A, 8hu6:C, 8hu6:D
10 8hub:C 572 66 0.0386 0.0297 0.2576 6.1 8hub:D
11 6fsz:BB 244 15 0.0205 0.0369 0.6000 6.3 4ifd:B, 5jea:B, 5k36:B, 8qcf:C
12 6ck1:A 375 138 0.0795 0.0933 0.2536 7.5 6ck1:B, 6ck1:C, 6ck1:D
13 4cys:A 534 70 0.0409 0.0337 0.2571 7.7 5aj9:A, 5aj9:B, 4cxk:A, 4cxk:B, 4cxs:A, 4cxs:B, 4cxu:A, 4cxu:B, 4cyr:A, 4cyr:B, 4cys:B, 1hdh:A, 1hdh:B
14 2czy:A 77 43 0.0341 0.1948 0.3488 8.2
15 7ni5:A 2791 183 0.0977 0.0154 0.2350 9.0 7ni4:A, 7ni4:B, 7ni5:B, 7ni6:A, 7ni6:B, 8oxq:A, 8oxq:B
16 6xeo:A 1118 73 0.0386 0.0152 0.2329 9.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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