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BioLiP
>protein
GAENNMVRLSRIIIDPERLEEYNAYLKEEIEVSMRLEPGVLVLYAVAEKERPNHVTILEIYADEAAYKSHIATPHFKKYK
EGTLDMVQMLELIDATPLIPGLKMK

The query sequence (length=105) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length 		Aligned
length 		Identity
(normalized by query) 		Identity
(normalized by hit) 		Identity (normalized
by aligned length) 		E-value Homologs
to hit
1 3kkf:A 105 105 1.0000 1.0000 1.0000 4.36e-73
2 1tuv:A 103 31 0.0952 0.0971 0.3226 0.89
3 8eey:A 1544 68 0.2000 0.0136 0.3088 2.3 7yna:A, 7ynb:A, 7ync:A
4 7y9y:A 1482 68 0.2000 0.0142 0.3088 2.4 8wml:A
5 7tvf:B 175 43 0.1429 0.0857 0.3488 2.4 9c1a:A, 9c1b:A, 9c1b:B, 9c1b:C, 9c1b:D, 3kko:A, 3kko:B, 3kko:P, 3kkp:A, 3kkq:A, 3pir:A, 3pit:A, 7sd0:B, 7tvf:E, 7txh:A, 7txh:D, 7upi:A, 1x1r:A, 1x1s:A
6 7pub:Cj 227 69 0.2095 0.0969 0.3188 3.3 6hiv:Cj, 6hiw:Cj, 6hiy:Cj, 7pua:Cj, 6sga:Cj, 6sgb:Cj
7 8wmc:A 1249 65 0.1905 0.0160 0.3077 3.6
8 8d1v:A 1229 65 0.1905 0.0163 0.3077 3.7
9 8eex:A 1284 65 0.1905 0.0156 0.3077 3.7
10 7ynd:A 1567 65 0.1905 0.0128 0.3077 3.7
11 7y9x:A 1458 65 0.1905 0.0137 0.3077 3.8 8gs2:A
12 7yn9:A 1514 65 0.1905 0.0132 0.3077 3.8
13 7ane:ad 694 16 0.0952 0.0144 0.6250 8.9

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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