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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
>protein
FYTLNIAEIAERIGNDDCAYQVLMAFINENGEAQMLNKTAVAEMIQLSKPTVFATVNSFYCAGYIDETRVGRSKIYTLSD
LGVEIVECFKQKA

The query sequence (length=93) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 4aso:A 93 93 1.0000 1.0000 1.0000 7.30e-66 4aso:B, 4aso:D, 4aso:E, 4aso:F, 4aso:G, 4aso:H, 4aso:I, 4aso:K, 4aso:J, 4aso:L, 4aso:M, 4aso:N, 4aso:O, 4aso:P, 4ass:E, 4ass:F, 4ass:G, 4ass:H
2 4pyd:C 154 43 0.1613 0.0974 0.3488 0.17 4pya:A, 4pyd:A, 4pyd:B, 4pyd:E, 4pyd:D, 4pyd:F
3 2iop:A 618 82 0.1720 0.0259 0.1951 1.5 2iop:B, 2iop:C, 2iop:D, 2ior:A, 1y4s:A, 1y4s:B
4 4dzh:A 439 80 0.2366 0.0501 0.2750 3.8
5 8bha:A 336 42 0.1290 0.0357 0.2857 4.5 8bgi:A, 8bgi:E, 8bgi:B, 8bgi:C, 8bgi:D, 8bha:E, 8bha:B, 8bha:C, 8bha:D, 8bhb:A, 8bhb:E, 8bhb:B, 8bhb:C, 8bhb:D, 8bhg:A, 8bhg:E, 8bhg:C, 8bhg:D, 8bhi:A, 8bhi:E, 8bhi:B, 8bhi:C, 8bhi:D, 8bhk:A, 8bhk:B, 8bhk:C, 8bhk:D, 8bhk:E, 8bhm:A, 8bhm:E, 8bhm:B, 8bhm:C, 8bhm:D, 8bho:A, 8bho:E, 8bho:B, 8bho:C, 8bho:D, 8bhq:A, 8bhq:E, 8bhq:B, 8bhq:C, 8bhq:D, 8bhr:A, 8bhr:E, 8bhr:B, 8bhr:C, 8bhr:D, 8bhs:A, 8bhs:E, 8bhs:B, 8bhs:C, 8bhs:D
6 6l4t:12 173 24 0.1183 0.0636 0.4583 6.7 6l4u:12
7 2azn:A 219 21 0.1075 0.0457 0.4762 7.4 2azn:B, 2azn:C, 2azn:D, 2azn:E, 2azn:F
8 3lkv:A 296 71 0.2043 0.0642 0.2676 8.8

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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