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BioLiP
>protein
FTGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESEENLFEIITADEVHYFLQ
AATPKERTEWIKAIQMASR

The query sequence (length=99) is searched through a non-redundant set of database sequences protein_nr.fasta.gz clustered at 90% identity cutoff to identify representative hits. Homologs that belong to the same sequence cluster of the representative hit are listed in the last column of the table.

# Hit Hit
length
Aligned
length
Identity
(normalized by query)
Identity
(normalized by hit)
Identity (normalized
by aligned length)
E-value Homologs
to hit
1 2i5f:A 99 99 1.0000 1.0000 1.0000 2.87e-72 2i5c:A, 2i5c:B, 2i5c:C
2 9c1w:A 388 98 0.2929 0.0747 0.2959 5.91e-08 8q61:A
3 6bbp:A 520 114 0.3333 0.0635 0.2895 7.07e-08 2a5d:A, 2a5f:A, 2a5g:A, 6bbq:A, 1e0s:A, 1fgy:A, 1fhw:A, 1fhw:B, 1fhx:A, 1fhx:B, 4fme:C, 4fme:F, 2j5x:A, 2j5x:B, 4kax:A, 4kax:B, 3n5c:A, 3n5c:B, 3pcr:B, 2r09:A, 2r09:B, 2r0d:A, 2r0d:B, 3vhx:A, 3vhx:C, 3vhx:E, 3vhx:G, 2w83:A, 2w83:B, 2w83:E, 7xrd:A, 7xrd:B, 7xrd:C, 7xrd:D
4 6u3e:A 397 114 0.3333 0.0831 0.2895 8.01e-08 6u3e:B, 6u3g:A, 6u3g:B
5 6hhg:A 386 98 0.2929 0.0751 0.2959 1.23e-07 4ejn:A, 6hhf:A, 6hhh:A, 7nh4:A, 7nh5:A, 3o96:A, 6s9x:A
6 1u27:A 119 115 0.3434 0.2857 0.2957 1.38e-06 1u29:A
7 6s9w:A 411 102 0.3030 0.0730 0.2941 3.27e-06 6buu:A, 6buu:B, 6ccy:A, 3cqu:A, 3cqw:A, 4ekk:A, 4ekk:B, 4ekl:A, 4gv1:A, 1h10:A, 6hhi:A, 6hhj:A, 3mv5:A, 3mvh:A, 6npz:A, 6npz:B, 3ocb:A, 3ocb:B, 3ow4:A, 3ow4:B, 3qkk:A, 3qkl:A, 3qkm:A, 1unq:A, 2uvm:A, 8uvy:A, 8uw2:A, 8uw7:A, 8uw9:A, 2uzs:A
8 3tfm:A 208 95 0.2828 0.1346 0.2947 4.45e-06
9 7kjz:A 102 99 0.2828 0.2745 0.2828 3.70e-05 7kjz:B
10 1fao:A 100 92 0.2828 0.2800 0.3043 8.49e-05
11 4hhv:A 103 102 0.3131 0.3010 0.3039 1.19e-04 4hhv:B
12 5kcv:A 353 99 0.2929 0.0822 0.2929 8.43e-04
13 3aj4:A 112 105 0.2727 0.2411 0.2571 0.47
14 8t8s:B 664 41 0.1717 0.0256 0.4146 2.2 3f6k:A, 5mrh:A, 5mri:A, 4msl:A, 4n7e:A, 5nmr:A, 4po7:A, 8t8r:A, 8t8s:A, 6x3l:A, 6x48:A, 6x4h:A
15 5hzi:A 476 33 0.1414 0.0294 0.4242 5.7 5djt:A, 5dju:A, 5dju:C, 5efw:A, 5hzi:B, 5hzj:A, 5hzj:B, 5hzk:B, 5hzk:D, 7pgx:AAA, 7pgy:AAA, 7pgz:AAA, 7ph0:AAA, 2v0u:A, 2v0w:A, 2v1a:A, 2v1b:A
16 5hev:F 210 45 0.1414 0.0667 0.3111 6.4 5hev:A, 5hev:B, 5hev:C
17 3nyc:A 381 31 0.1313 0.0341 0.4194 7.6 3nye:A, 3nyf:A, 6p9d:A, 6pld:A, 7rdf:A, 3sm8:A
18 3s6p:C 536 34 0.1313 0.0243 0.3824 9.5 3s6p:B
19 5exe:C 314 19 0.1010 0.0318 0.5263 9.7 5c4i:C, 5c4i:F, 5exd:C, 5exd:F, 5exd:I, 5exd:L, 5exe:F

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Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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